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python-cogent

framework for genomic biology

Variants:
PyCogent is a software library for genomic biology. It is a fully integrated and thoroughly tested framework for: * controlling third-party applications, * devising workflows; querying databases, * conducting novel probabilistic analyses of biological sequence evolution, and * generating publication quality graphics. It is distinguished by many unique built-in capabilities (such as true codon alignment) and the frequent addition of entirely new methods for the analysis of genomic data.
Homepage:
Package version:1.5.1-2
Architecture:i386
Distribution:Debian
Filename:python-cogent_1.5.1-2_i386.deb

/usr/share/doc/python-cogent/README.gz

The Readme
==========

:Download: `From sourceforge <http://sourceforge.net/projects/pycogent>`_ or follow the :ref:`quick-install` instructions.
:Registration: To be informed of bugs, new releases please subscribe to the `mailing lists at sourceforge <http://sourceforge.net/projects/pycogent>`_.

Dependencies
------------

The toolkit requires Python 2.5.1 or greater, and Numpy 1.3 or greater. As
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/usr/share/doc/python-cogent/html/README.html


<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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<html xmlns="http://www.w3.org/1999/xhtml">
  <head>
    <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
    
    <title>The Readme — PyCogent v1.5.1 documentation</title>
    <link rel="stylesheet" href="_static/default.css" type="text/css" />

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/usr/share/doc/python-cogent/changelog.Debian.gz

python-cogent (1.5.1-2) unstable; urgency=low

  * Explicitly added python-numpy as dependency
    to binary ... where is the dh_shlibdeps?
    Many thanks to Jakub (Closes: #640262).
  * Added build-dependency on cython after look in setup.py
  * Some further formatting in debian/control
  * Added -dbg package
  * Fiddled with debian/*.install to actually install the libraries
    and fill that -
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/usr/share/doc/python-cogent/changelog.gz

*********
Changelog
*********

Cogent 1.5 - 1.6
================

New Features
------------

* Align
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/usr/share/doc/python-cogent/html/ChangeLog.html


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/usr/share/doc/python-cogent/html/licenses.html


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/usr/share/doc/python-cogent/copyright

This work was packaged for Debian by:

    Sri Girish Srinivasa Murthy <srigirish@evolbio.mpg.de>
  
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