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blast2

Basic Local Alignment Search Tool

Variants:
The famous sequence alignment program. This is "official" NCBI version, #2. The blastall executable allows you to give a nucleotide or protein sequence to the program. It is compared against databases and a summary of matches is returned to the user.

Note that databases are not included in Debian; they must be retrieved manually.

Homepage:
Package version:1:2.2.21.20090809-2
Architecture:i386
Distribution:Debian
Filename:blast2_2.2.21.20090809-2_i386.deb

/usr/share/man/man1/blast.1.gz

BLAST(1)              NCBI Tools User's Manual              BLAST(1)



NAME
       bl2seq,  blast2,  blastall, blastall_old, blastcl3, blastpgp,
       impala, megablast, rpsblast, seedtop - Basic Local  Alignment
       Search Tool

SYNOPSIS
       bl2seq    [-]    [-A]    [-D N]    [-E N]   [-F str]   [-G N]
       [-I "start stop"] [-J "start stop"] [-M str] [-S N] [-T] [-U]
       [-V]  [-W N
more»

/usr/share/man/man1/blastclust.1.gz

BLASTCLUST(1)         NCBI Tools User's Manual         BLASTCLUST(1)



NAME
       blastclust - BLAST score-based single-linkage clustering

SYNOPSIS
       blastclust  [-]  [-C]  [-L X]  [-S X]  [-W N]  [-a N]  [-b F]
       [-c filename] [-d filename]  [-e F]  [-i filename]  [-l file‐
       name]   [-o filename]   [-p F]   [-r filename]  [-s filename]
       [-v [filename]]

DESCRIPTION
    
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/usr/share/man/man1/copymat.1.gz

COPYMAT(1)            NCBI Tools User's Manual            COPYMAT(1)



NAME
       copymat - convert ASCII matrices into a database suitable for
       quick reading

SYNOPSIS
       copymat [-] [-H] [-P filename] [-W N] [-f X] [-r F]

DESCRIPTION
       copymat converts ASCII matrices produced by makemat(1) into a
       database that can be read into memory quickly.

OPTIONS
       A summary of
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/usr/share/man/man1/fastacmd.1.gz

FASTACMD(1)           NCBI Tools User's Manual           FASTACMD(1)



NAME
       fastacmd - retri
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/usr/share/man/man1/formatdb.1.gz

FORMATDB(1)           NCBI Tools User's Manual           FORMATDB(1)



NAME
       formatdb - forma
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/usr/share/man/man1/formatrpsdb.1.gz

FORMATRPSDB(1)        NCBI Tools User's Manual        FORMATRPSDB(1)



NAME
       formatrpsdb - Bu
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/usr/share/man/man1/makemat.1.gz

MAKEMAT(1)            NCBI Tools User's Manual            MAKEMAT(1)



NAME
       makemat - conver
more»

/usr/share/man/man1/taxblast.1.gz

TAXBLAST(1)           NCBI Tools User's Manual           TAXBLAST(1)



NAME
       taxblast - taxon
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