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ClonalFrame can be applied to any kind of sequence data, from a single fragment of DNA to whole genomes. It is well suited for the analysis of MLST data, where 7 gene fragments have been sequenced, but becomes progressively more powerful as the sequenced regions increase in length and number up to whole genomes. However, it requires the sequences to be aligned. If you have genomic data that is not aligned, we recommend using Mauve which produces alignment of whole bacterial genomes in exactly the format required for analysis with ClonalFrame.
ClonalFrame(1) ClonalFrame(1) NAME ClonalFrame - inference of bacterial microevolution using multilocus sequence data SYNOPSIS ClonalFrame [OPTIONS] inputfile outputfile DESCRIPTION ClonalFrame identifies the clonal relationships between the members of a sample, while also estimating the chromosomal posi more»
clonalframe (1.2-3) unstable; urgency=low [ A. Costa ] * Corrected typos in debian/ClonalFrame.1 (Closes: #650474). [ Andreas Tille ] * debian/control: - Fixed Vcs fields - Remove quilt from build-depends -- Andreas Tille <firstname.lastname@example.org> Sat, 07 Jan 2012 09:26:15 +0100 clonalframe (1.2-2) unstable; urgency=low * Fix gcc-4.6 build issue (thanks to Sebastian Ramacher more»
Format: http://dep.debian.net/deps/dep5/ Upstream-Name: ClonalFrame Upstream-Contact: Xavier Didelot <email@example.com> Source: http://www.xavierdidelot.xtreemhost.com/clonalframe.htm Files: * Copyright: © 2009-2010 Xavier Didelot <firstname.lastname@example.org> License: GPL-2+ ClonalFrame is free software; you can redistribute it and/or modify it under the terms of the GNU General Public more»