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clustalw

global multiple nucleotide or peptide sequence alignment

Variants:
This program performs an alignment of multiple nucleotide or amino acid sequences. It recognizes the format of input sequences and whether the sequences are nucleic acid (DNA/RNA) or amino acid (proteins). The output format may be selected from in various formats for multiple alignments such as Phylip or FASTA. Clustal W is very well accepted.

The output of Clustal W can be edited manually but preferably with an alignment editor like SeaView or within its companion Clustal X. When building a model from your alignment, this can be applied for improved database searches. The Debian package hmmer creates such in form of an HMM.

Homepage:
Package version:2.1+lgpl-2~bpo60+1
Architecture:i386
Distribution:Debian
Filename:clustalw_2.1+lgpl-2~bpo60+1_i386.deb

/usr/share/doc/clustalw/README

Please see also ftp://ftp.ebi.ac.uk/pub/software/clustalw2/README
and http://www.clustal.org/

HOWTO COMPILE THE SOURCE AND INSTALL
----------------------------------------------------------------------

You will need a Unix environment with a working C++ compiler to
compile the ClustalW source. We recommened GCC>=4.2. ICC users
need to configure the package as follows:
./configure CXX=icpc

For c
more»

/usr/share/doc/clustalw/README.Debian

Clustal W for Debian
────────────────────

Since version 2.1, Clustal is free software. The upstream archives have been
updated in December 2010 to clarify that, but their version number was not
changed. Because the Debian archive does not support this, the Debian package's
version is 2.1+lgpl.

Charles Plessy <plessy@debian.org>  Sat, 29 Jan 2011 19:59:40 
more»

/usr/share/man/man1/clustalw.1.gz

CLUSTALW(1)                Clustal Manual                CLUSTALW(1)



NAME
       clustalw - Multiple alignment of nucleic acid and protein
       sequences

SYNOPSIS
       clustalw [-infile] file.ext [OPTIONS]

       clustalw [-help | -fullhelp]

DESCRIPTION
       Clustal W is a general purpose multiple alignment program for
       DNA or proteins.

       The program performs simultaneous a
more»

/usr/share/doc/clustalw/changelog.Debian.gz

clustalw (2.1+lgpl-2~bpo60+1) squeeze-backports; urgency=low

  * Backported for Squeeze.

 -- Charl
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/usr/share/doc/clustalw/changelog.gz

----------------------------------------------------------------------
Version 2.1
-----------------
more»

/usr/share/doc/clustalw/copyright

Source: http://www.clustal.org/download/current/clustalw-2.1.tar.gz

Files: *
Copyright: © Des Higg
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