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dialign-tx

Segment-based multiple sequence alignment

Variants:
DIALIGN-TX is a command line tool to perform multiple alignment of protein or DNA sequences. It is a complete reimplementation of the segment-base approach including several new improvements and heuristics that significantly enhance the quality of the output alignments compared to DIALIGN 2.2 and DIALIGN-T. For pairwise alignment, DIALIGN-TX uses a fragment-chaining algorithm that favours chains of low-scoring local alignments over isolated high-scoring fragments. For multiple alignment, DIALIGN-TX uses an improved greedy procedure that is less sensitive to spurious local sequence similarities.

DIALIGN-TX has been published in Amarendran R. Subramanian, Michael Kaufmann, Burkhard Morgenstern: Improvement of the segment-based approach for multiple sequence alignment by combining greedy and progressive alignment strategies, Algorithms for Molecular Biology 3:6, 2008

Homepage:
Package version:1.0.2-1
Architecture:i386
Distribution:Debian
Filename:dialign-tx_1.0.2-1_i386.deb

/usr/share/doc/dialign-tx/README.Debian

DIALIGN-TX for Debian
--------------------

The configuration directory shipped with the source is installed in
/usr/share/dialign-tx on your system.


Possible issues with this package:

 - Users have no write acces to /usr/share/dialign-tx, so problems are expected
   when running dialign-t -C.

 -- Charles Plessy <plessy@debian.org>  Fri, 04 Apr 2008 11:23:25 +0900

/usr/share/man/man1/dialign-tx.1.gz

DIALIGN-TX(1)          DIALIGN-TX: Parameters          DIALIGN-TX(1)



NAME
       dialign-tx - Segment-based multiple sequence alignment

SYNOPSIS
       dialign-tx [OPTIONS] {conf-directory} {fasta-file}
                  [fasta-out-file]

DESCRIPTION
       DIALIGN-TX is an improved algorithm for segment-based
       multiple protein alignments. DIALIGN-TX is a complete
       reimplementation
more»

/usr/share/doc/dialign-tx/changelog.Debian.gz

dialign-t (1.0.2-1) unstable; urgency=low

  * New upstream release:
    - Fixes memory handling with anchor points.
    - New option: -A optional anchor file [DEFAULT none]
  * debian/dialign-tx.1*: documented the -A option.
  * debian/co{mpat,trol}: using Debhelper 7.

 -- Charles Plessy <plessy@debian.org>  Mon, 15 Dec 2008 14:12:59 +0900

dialign-t (1.0.1-2) unstable; urgency=low

  * debian/c
more»

/usr/share/doc/dialign-tx/copyright

Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat?action=recall&rev=129
Upstrea
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