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AJAX covers standard data structures, including strings, sequences, file handles, queues, hashes, heaps, lists, dictionaries, trees and dynamic arrays. It also covers standard algorithms including comparisons, pattern matching, sorting, and iterators. AJAX will also provide a set of high level graphics functions suited to the needs of sequence analysis applications.
The NUCLEUS library provides higher-level functions specific to molecular sequence analysis, including sequence comparisons, translation, codon usage and annotation.
It also contains a eplplot, an EMBOSS, a fork of the plplot library.
In Debian, these libraries are to be considered private.
emboss (6.4.0-4) unstable; urgency=low * use autoreconf to enable latest changes -- Andreas Tille <firstname.lastname@example.org> Fri, 10 Aug 2012 22:46:33 +0200 emboss (6.4.0-3) unstable; urgency=low * Import patches prepared by Felix Geyer <email@example.com> to cope with the --as-needed issue when linking against database clients (thanks to Felix) Closes: #650237 * Fix typo to build more»
Version 6.4.0 15-Jul-2011 DBXFLAT can index FASTQ format short read sequence files, allowing individual sequences to be rapidly retrieved by name. Genpept format has changed since we last tested it. The LOCUS line is simpler. EMBOSS now supports GenPept as documented and distributed by NCBI. Sequence in SAM format ignores the reference sequence name. Previous releases saved it as the a more»
Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Source: ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-6.4.0.tar.gz Files: * Copyright: The EMBOSS developers or their employers. License: emboss EMBOSS License (http://emboss.sourceforge.net/licence/) . The AJAX and NUCLEUS libraries are released under the GNU Library General Public Licence. . The EMBOSS Administrator�� more»