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fastlink

A faster version of pedigree programs of Linkage

Variants:
Genetic linkage analysis is a statistical technique used to map genes and find the approximate location of disease genes. There was a standard software package for genetic linkage called LINKAGE. FASTLINK is a significantly modified and improved version of the main programs of LINKAGE that runs much faster sequentially, can run in parallel, allows the user to recover gracefully from a computer crash, and provides abundant new documentation. FASTLINK has been used in over 1000 published genetic linkage studies.

This package contains the following programs: ilink: GEMINI optimization procedure to find a locally optimal value of the theta vector of recombination fractions linkmap: calculates location scores of one locus against a fixed map of other loci lodscore: compares likelihoods at locally optimal theta mlink: calculates lod scores and risk with two of more loci unknown: identify possible genotypes for unknowns

Homepage:
Package version:4.1P-fix95-1
Architecture:i386
Distribution:Debian
Filename:fastlink_4.1P-fix95-1_i386.deb

/usr/share/doc/fastlink/README.Debian

fastlink for Debian
----------------------

I uncompressed and untared the downloaded latest archive fastlink.tar.Z,
renamed the resulting directory to fastlink-4.1P-fix81 (because of the last
bugfix with no. 81), and made a new tarball fastlink-4.1P-fix81.tar.gz which
was then used for upgrading the previous Debian package version with uupdate. 

 -- Dr. Guenter Bechly <gbechly@debian.org>, Sat, 
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/usr/share/man/man1/ilink.1.gz

ILINK(1)                                                    ILINK(1)



NAME
       ilink - GEMINI optimization procedure to find a locally opti‐
       mal value of the theta vector of recombination fractions

SYNOPSIS
       ilink [options] ipedfile.dat pedfile.dat

DESCRIPTION
       This manual page documents briefly  the  ilink  command.   In
       fact  this  is a very raw intend to provi
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/usr/share/man/man1/linkmap.1.gz

LINKMAP(1)                                                LINKMAP(1)



NAME
       linkmap  -  calculates location scores of one locus against a
       fixed map of other loci

SYNOPSIS
       linkmap [options] ipedfile.dat pedfile.dat

DESCRIPTION
       This manual page documents briefly the linkmap  command.   In
       fact  this  is a very raw intend to provide a manpage because
       the D
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/usr/share/man/man1/lodscore.1.gz

LODSCORE(1)                                              LODSCORE(1)



NAME
       lodscore - compa
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/usr/share/man/man1/mlink.1.gz

MLINK(1)                                                    MLINK(1)



NAME
       mlink - calculat
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/usr/share/man/man1/unknown.1.gz

UNKNOWN(1)                                                UNKNOWN(1)



NAME
       unknown - identi
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/usr/share/doc/fastlink/changelog.Debian.gz

fastlink (4.1P-fix95-1) unstable; urgency=low

  * New upstream bugfix release
  * debian/control: B
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/usr/share/doc/fastlink/copyright

X-Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat
X-Debianized-By: Andreas Ti
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