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muscle

Multiple alignment program of protein sequences

Variants:
MUSCLE is a multiple alignment program for protein sequences. MUSCLE stands for multiple sequence comparison by log-expectation. In the authors tests, MUSCLE achieved the highest scores of all tested programs on several alignment accuracy benchmarks, and is also one of the fastest programs out there.
Homepage:
Package version:1:3.8.31-1
Architecture:i386
Distribution:Debian
Filename:muscle_3.8.31-1_i386.deb

/usr/share/doc/muscle/README.Debian

muscle for Debian
-----------------

Please cite

  Edgar, Robert C. (2004), MUSCLE: multiple sequence alignment with
  high accuracy and high throughput, Nucleic Acids Research 32(5), 1792-97.

when publishing results achieved with this software.

Steffen

 -- Steffen Moeller <steffen_moeller@gmx.de>, Sun, 19 Sep 2004 00:51:19 +0200



There has been two different upstream releases with the same 
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/usr/share/man/man1/muscle.1.gz

MUSCLE(1)                   Muscle Manual                  MUSCLE(1)



NAME
       muscle - Multiple Protein Sequence Alignment

SYNOPSIS
       muscle -in input file (fasta)
              [-out output file (default fasta)] [-diags]
              [-log log file] [-maxiters n] [-maxhours n] [-maxmb m]
              [-html] [-msf] [-clw] [-clwstrict] [-log[a] logfile]
              [-quiet] [-stabl
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/usr/share/doc/muscle/changelog.Debian.gz

muscle (1:3.8.31-1) unstable; urgency=low

  [ Charles Plessy ]
  * New upstream release (Closes: #643443).
  * debian/control: Enhances: t-coffee.
  * Changed the doc-base section according to the new policy.
  * Updated my email address.
  * Updated debian/watch to new version scheme and download location.
  * Repack usptream archive and implemented a get-orig-source target
    (debian/rules, de
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/usr/share/doc/muscle/copyright

Format: http://dep.debian.net/deps/dep5/
Source: http://www.drive5.com/muscle/downloads3.8.31/muscle
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