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plink

whole-genome association analysis toolset

Variants:
plink expects as input the data from SNP (single nucleotide polymorphism) chips of many individuals and their phenotypical description of a disease. It finds associations of single or pairs of DNA variations with a phenotype and can retrieve SNP annotation from an online source.

SNPs can evaluated individually or as pairs for their association with the disease phenotypes. The joint investigation of copy number variations is supported. A variety of statistical tests have been implemented.

Please note: The executable was renamed to p-link because of a name clash. Please read more about this in /usr/share/doc/README.Debian.

Homepage:
Package version:1.07-1
Architecture:i386
Distribution:Debian
Filename:plink_1.07-1_i386.deb

/usr/share/doc/plink/README.Debian

plink for Debian
----------------

plink is a very fine piece of software and the world should thank
the authors for their efforts. plink knows how to interact
with gplink and haploview. The packaging of the latter is already
being prepared. The prior still seeks a maintainer.

Users of plink may also be interested in other packages the that
Debian-Med.alioth.debian.org community has brought ot De
more»

/usr/share/doc/plink/README.txt

PROGRAM: PLINK

DESCRIPTION: Whole-genome association analysis toolset

AUTHOR: Shaun Purcell

CONTACT: plink@chgr.mgh.harvard.edu

YEAR: 2006, 2007

LICENSE: Released under GNU General Public License, v2 (see
COPYING.txt)

DOCUMENTATION: http://pngu.mgh.harvard.edu/purcell/plink/

INSTALLATION: If you have download a zip or gzipped archive with an
executable binary, no installation is necessary (
more»

/usr/share/man/man1/p-link.1.gz

P-LINK(1)                                                  P-LINK(1)



NAME
       p-link - whole genome SNP analysis

SYNOPSIS
       p-link --help

DESCRIPTION
       This binary was renamed from plink to p-link because there is
       a name clash between this plink and a part of the  ssh  clone
       putty.   Please  read  /usr/share/doc/plink/README.Debian  to
       learn more about this.

more»

/usr/share/doc/plink/changelog.Debian.gz

plink (1.07-1) unstable; urgency=low

  * New upstream version
  * Removed debian/patches/20_plink-1
more»

/usr/share/doc/plink/copyright

This package was debianized by Steffen Moeller <moeller@debian.org> on
Mon, 14 Jul 2008 17:30:41 +02
more»

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