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rnahybrid

Fast and effective prediction of microRNA/target duplexes

Variants:
RNAhybrid is a tool for finding the minimum free energy hybridisation of a long and a short RNA. The hybridisation is performed in a kind of domain mode, ie. The short sequence is hybridised to the best fitting part of the long one. The tool is primarily meant as a means for microRNA target prediction.

Public research assisted by RNAhybrid should cite: Marc Rehmsmeier, Peter Steffen, Matthias Höchsmann, Robert Giegerich Fast and effective prediction of microRNA/target duplexes RNA, 10:1507-1517, 2004.

Homepage:
Package version:2.1-2
Architecture:i386
Distribution:Debian
Filename:rnahybrid_2.1-2_i386.deb

/usr/share/doc/rnahybrid/README.gz

RNAhybrid 2.0

RNAhybrid is a tool for finding the minimum free energy hybridisation
of a long (target) and a short (query) RNA. The hybridisation is
performed in a kind of domain mode, ie. the short sequence is
hybridised to the best fitting part of the long one. The tool is
primarily meant as a means for microRNA target prediction.  In
addition to mfes, the program calculates p-values based on e
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/usr/share/man/man1/RNAcalibrate.1.gz

RNACALIBRATE(1)                                      RNACALIBRATE(1)



NAME
       RNAcalibrate  -  calibrate  statistics of secondary structure
       hybridisations of RNAs

SYNOPSIS
       RNAcalibrate [-h] [-d frequency_file] [-f from,to]  [-k  sam‐
       ple_size]    [-l   mean,std]   [-m   max_target_length]   [-n
       max_query_length]      [-u       iloop_upper_limit]       [-v
     
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/usr/share/man/man1/RNAeffective.1.gz

RNAEFFECTIVE(1)                                      RNAEFFECTIVE(1)



NAME
       RNAeffective  -  calculation of effective numbers of ortholo‐
       gous miRNA targets

SYNOPSIS
       RNAeffective [-h] [-d frequency_file] [-f from,to]  [-k  sam‐
       ple_size]    [-l   mean,std]   [-m   max_target_length]   [-n
       max_query_length]      [-u       iloop_upper_limit]       [-v
       
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/usr/share/man/man1/RNAhybrid.1.gz

RNAHYBRID(1)                                            RNAHYBRID(1)



NAME
       RNAhybrid  -  ca
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/usr/share/doc/rnahybrid/changelog.Debian.gz

rnahybrid (2.1-2) unstable; urgency=low

  [ Charles Plessy ]
  * Moved the Homepage: field out from
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/usr/share/doc/rnahybrid/changelog.gz

Tue Nov 16 16:46:51 2004  Marc Rehmsmeier  <marc@TechFak.Uni-Bielefeld.DE>

	* RNAcalibrate man page
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/usr/share/doc/rnahybrid/copyright

This package was debianized by Charles Plessy <charles-debian-nospam@plessy.org> on
Fri,  1 Jun 2007
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