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saint

Significance Analysis of INTeractome

Variants:
SAINT implements the scoring algorithm for protein-protein interaction data using label free quantitative proteomics data in AP-MS experiments. It was used for spectral count data in the yeast kinase interactome work not incorporating control purification, as well as a generalized implementation for spectral count data with and without control purification.

Alternatively, you can also run SAINT in combination with ProHits.

The package was written for either doing analysis without or with control IPs and

Homepage:
Package version:2.3.3-1
Architecture:i386
Distribution:Debian
Filename:saint_2.3.3-1_i386.deb

/usr/share/doc/saint/README.Debian

SAINT for Debian
================

Documentation:
--------------

You can download a PDF file with more detailed instructions than you
can read in the relevant man pages at

   http://sourceforge.net/projects/saint-apms/files/

which is called saint-vignette-<YYYYMonDD>.pdf.


Other Hint:
-----------

The description speaks explicitly about the program ProHits which
can be found here:

  http://pr
more»

/usr/share/man/man1/saint-int-ctrl.1.gz

saint-int-ctrl(1)                                  saint-int-ctrl(1)



NAME
       saint-int-ctrl - suport continuous measurements in SAINT

DESCRIPTION
       usage: saint-int-ctrl [interactionFile] [preyFile] [baitFile]
       [nburnin] [niter]

SEE ALSO
       You can download a PDF file with more  detailed  instructions
       from

              http://sourceforge.net/projects/saint-apms/fil
more»

/usr/share/man/man1/saint-reformat.1.gz

SAINT-SPC-REFORMAT(1)                          SAINT-SPC-REFORMAT(1)



NAME
       saint-spc-reformat - imputs missing data and cleans up dupli‐
       cate entries

DESCRIPTION
       usage: saint-spc-reformat [interactionFile] [preyFile] [bait‐
       File]  usage: saint-spc-reformat [interactionFile] [preyFile]
       [baitFile] [# Control]

       usage: saint-spc-reformat [interactionFil
more»

/usr/share/man/man1/saint-spc-ctrl.1.gz

SAINT-SPC-CTRL(1)                                  SAINT-SPC-CTRL(1)



NAME
       saint-spc-ctrl -
more»

/usr/share/man/man1/saint-spc-noctrl-matrix.1.gz

SAINT-SPC-NOCTRL-MATRIX(1)                SAINT-SPC-NOCTRL-MATRIX(1)



NAME
       saint-spc-noctrl
more»

/usr/share/man/man1/saint-spc-noctrl.1.gz

SAINT-SPC-NOCTRL(1)         User Commands        SAINT-SPC-NOCTRL(1)



NAME
       saint-spc-noctrl
more»

/usr/share/doc/saint/changelog.Debian.gz

saint (2.3.3-1) unstable; urgency=low

  * Initial Release  (Closes: #671224)

 -- Andreas Tille <ti
more»

/usr/share/doc/saint/copyright

Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: SAINT
Upstr
more»

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