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seqan-apps

C++ library for the analysis of biological sequences

Variants:
SeqAn is a C++ template library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data. This library applies a unique generic design that guarantees high performance, generality, extensibility, and integration with other libraries. SeqAn is easy to use and simplifies the development of new software tools with a minimal loss of performance. This package contains the applications dfi, pair_align, micro_razers, seqan_tcoffee, seqcons, razers and tree_recon.
Homepage:
Package version:1.3.1-1
Architecture:i386
Distribution:Debian
Filename:seqan-apps_1.3.1-1_i386.deb

/usr/share/doc/seqan-apps/README.dfi.gz

                 Fast String Mining of Multiple Databases
                        under Frequency Constraints

                   http://www.seqan.de/projects/dfi.html

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Table of Contents
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  1.   Overview
  2.   Installation
  3.   Usage
  4.   Outpu
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/usr/share/doc/seqan-apps/README.insegt.gz

*** INSEGT - INtersecting SEcond Generation sequencing daTa with annotation ***

---------------------------------------------------------------------------
Table of Contents
---------------------------------------------------------------------------
  1.   Overview
  2.   Installation
  3.   Usage
  4.   Input Format
  5.   Output Format
  6.   Contact

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/usr/share/doc/seqan-apps/README.mason

Mason - A Read Simulator
========================

Copyright: (c) 2010 by Manuel Holtgrewe
License:   GPL v3.0
Homepage:  http://www.seqan.de/projects/mason.html

Mason is a read simulator for second-generation sequencing data.  At
the moment, the simulation of Illumina, 454 and Sanger reads is
supported.

How It Works
------------

Reads are sampled from a reference sequence.  The reference seque
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/usr/share/doc/seqan-apps/README.micro_razers.gz

*** MicroRazerS - Rapid Alignment of Small RNA Reads ***
http://www.seqan.de/projects/microRazers.ht
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/usr/share/doc/seqan-apps/README.razers.gz

*** RazerS - Fast Read Mapping with Sensitivity Control ***
http://www.seqan.de/projects/razers.html
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/usr/share/doc/seqan-apps/README.razers2.gz

*** RazerS - Fast Read Mapping with Sensitivity Control ***
http://www.seqan.de/projects/razers.html
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/usr/share/doc/seqan-apps/README.sak

Swiss Army Knife tool... It slices and dices and makes the laundry!

This tool allows to cut sequenc
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/usr/share/doc/seqan-apps/README.seqan_tcoffee

*************************************************
* Multiple sequence alignment - SeqAn::T-Coffee *

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