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theseus

superimpose macromolecules using maximum likelihood

Variants:
Theseus is a program that simultaneously superimposes multiple macromolecular structures. Theseus finds the optimal solution to the superposition problem using the method of maximum likelihood. By down-weighting variable regions of the superposition and by correcting for correlations among atoms, the ML superposition method produces very accurate structural alignments.

When macromolecules with different residue sequences are superimposed, other programs and algorithms discard residues that are aligned with gaps. Theseus, however, uses a novel superimposition algorithm that includes all of the data.

Homepage:
Package version:1.4.3-2
Architecture:i386
Distribution:Debian
Filename:theseus_1.4.3-2_i386.deb

/usr/share/doc/theseus/README.Debian

Theseus for Debian
==================


The getexamples script
----------------------

The getexamples script, found in /usr/share/doc/theseus/examples/, 
illustrates how data can be retrieved from PDB and Astral services, 
for subsequent analysis with theseus.

Note that some of the data files found in examples/, have a different
SCOP-sid in the most recent release of the Astral database.


 -- M
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/usr/share/doc/theseus/examples/README

This directory contains files for demonstrating how THESEUS can be run.

********************************************************************************
The pdb file 1s40.pdb is an NMR family of a telomere protein bound to a ssDNA.
It has 10 models. To do the ML superposition, run the following command:

theseus 1s40.pdb


**************************************************************************
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/usr/share/man/man1/theseus.1.gz

THESEUS(1)                Likelihood Rocks                THESEUS(1)



NAME
       theseus  - Maximum likelihood, multiple simultaneous superpo‐
       sitions with statistical analysis

SYNOPSIS
       theseus   [-aAbBcCdDeEfFgGhHiIjklLmMnNoOpPqQrRsStTuvVwWxXyYZ]
       pdbfile1 [pdbfile2 ...]

       and

       theseus_align        [-aAbBcCdDeEfFgGhHiIjklLmMnNoOpPqQrRsSt‐
       TuvVwWxXyY
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/usr/share/man/man1/theseus_align.1.gz

THESEUS_ALIGN(1)                                    THESEUS_ALIGN(1)



NAME
       theseus_align - 
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/usr/share/doc/theseus/changelog.Debian.gz

theseus (1.4.3-2) unstable; urgency=low

  * debian/patches/10_kbsd.patch: Correctly applied patch f
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/usr/share/doc/theseus/copyright

Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat?action=recall&rev=196
Upstrea
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