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tree-ppuzzle

Parallelized reconstruction of phylogenetic trees by maximum likelihood

Variants:
TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.

This is the parallelized version of tree-puzzle.

Homepage:
Package version:5.2-5
Architecture:i386
Distribution:Debian
Filename:tree-ppuzzle_5.2-5_i386.deb

/usr/share/doc/tree-ppuzzle/README

TREE-PUZZLE 5.2

TREE-PUZZLE is a computer program to reconstruct phylogenetic trees 
from molecular sequence data by maximum likelihood. It implements a
fast tree search algorithm, quartet puzzling, that allows analysis of 
large data sets and automatically assigns estimations of support to each
internal branch. TREE-PUZZLE also computes pairwise maximum likelihood 
distances as well as branch le
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/usr/share/doc/tree-ppuzzle/README.Debian

tree-puzzle for Debian
----------------------

tree-puzzle replaces the previous package puzzle, since the program was
renamed by upstream because of a name conflict with another program.
The command and manpage for tree-puzzle are renamed to tree-puzzle as well!

Now also the parallelized version is packaged in the package tree-ppuzzle.

 -- Andreas Tille <tille@debian.org>  Mon,  5 Nov 2001 11:0
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/usr/share/man/man1/tree-ppuzzle.1.gz

TREE-PPUZZLE(1)                                      TREE-PPUZZLE(1)



NAME
       tree-ppuzzle  - Reconstruction of phylogenetic trees by maxi‐
       mum likelihood (parallelized version)

SYNOPSIS
       tree-ppuzzle

DESCRIPTION
       This manual page documents briefly the tree-ppuzzle  command.
       This manual page was written for the Debian GNU/Linux distri‐
       bution because th
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/usr/share/doc/tree-ppuzzle/changelog.Debian.gz

tree-puzzle (5.2-5) unstable; urgency=low

  * Standards-Version: 3.8.1 (no changes needed)
  * Buil
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/usr/share/doc/tree-ppuzzle/changelog.gz

ChangeLog

($Id$)

Version  date		what has been changed

TODO:
	missing quartet handling
	missing qu
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/usr/share/doc/tree-ppuzzle/AUTHORS

since 1999 by Heiko A. Schmidt, Korbinian Strimmer, 
              Martin Vingron, Arndt von Haesele
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/usr/share/doc/tree-ppuzzle/copyright

This package was debianized by  -- Andreas Tille <tille@debian.org> on
Mon,  5 Nov 2001 11:00:04 +01
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