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librg-blast-parser-perl

very fast NCBI BLAST parser - binding for Perl

Variants:
This package contains Perl binding for a very fast C++ library that parses the default output of NCBI BLAST programs. BLAST results are returned in a convenient hash structure.

Evaluated on a very small test set, this parser is considerably faster than Zerg::Report from libzerg-perl.

Homepage:
Package version:0.02-2
Architecture:ia64
Distribution:Debian
Filename:librg-blast-parser-perl_0.02-2_ia64.deb

/usr/share/doc/librg-blast-parser-perl/README

RG-Blast-Parser version 0.01
============================

This package contains perl binding for a very fast C/C++ library for NCBI
BLAST -m 0 (default) output parsing.  BLAST results are returned in a
convenient hash structure.

INSTALLATION

To install this module type the following:

   perl Makefile.PL
   make
   make test
   make install

DEPENDENCIES

This module requires these other module
more»

/usr/share/man/man3/RG::Blast::Parser.3pm.gz

RG::Blast::ParserUser)Contributed Perl DocumenRG::Blast::Parser(3pm)



NAME
       RG::Blast::Parser - fast NCBI BLAST parser

SYNOPSIS
         use Data::Dumper;
         use RG::Blast::Parser;

         my $parser = RG::Blast::Parser->new(); # read from STDIN

         open( EXAMPLE, '<', '/usr/share/doc/librg-blast-parser-perl/examples/converged.ali' ) || confess($!);
         my $parser = RG:
more»

/usr/share/doc/librg-blast-parser-perl/changelog.Debian.gz

librg-blast-parser-perl (0.02-2) unstable; urgency=low

  * [Andreas Tille <tille@debian.org>]
    debian/control: Restored control file from Laszlo with better
    description which I accidentially ignored in the initial
    upload

 -- Laszlo Kajan <lkajan@rostlab.org>  Wed, 11 Apr 2012 09:19:39 +0200

librg-blast-parser-perl (0.02-1) unstable; urgency=low

  * Initial release in Debian (Closes:
more»

/usr/share/doc/librg-blast-parser-perl/changelog.gz

Revision history for Perl extension RG::Blast::Parser.

0.02  Thu Mar 29 12:51:00 2012
	- depends on
more»

/usr/share/doc/librg-blast-parser-perl/copyright

Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: librg-blast
more»

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