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exonerate

generic tool for pairwise sequence comparison

Variants:
Exonerate allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics. Much of the functionality of the Wise dynamic programming suite was reimplemented in C for better efficiency. Exonerate is an intrinsic component of the building of the Ensembl genome databases, providing similarity scores between RNA and DNA sequences and thus determining splice variants and coding sequences in general.

An In-silico PCR Experiment Simulation System (see the ipcress man page) is packaged with exonerate.

This package also comes with a selection of utilities for performing simple manipulations quickly on fasta files beyond 2Gb

Homepage:
Package version:2.2.0-6
Architecture:ia64
Distribution:Debian
Filename:exonerate_2.2.0-6_ia64.deb

/usr/share/doc/exonerate/README.Debian

exonerate for Debian
--------------------

Charles has fixed the man pages for this package - many thanks to him.

The upstream author, Guy Slater, is very supportive of Debian. He even
gave brief instructions on how to build a package in his README. 
This is much appreciated.

Guy was contacted asking for a clarification of the version of the
GPL he refers to and to avoid the web link in the C so
more»

/usr/share/doc/exonerate/README.gz

README file for exonerate package.

FAQs

-----------------------------------------------------------------
General
=======

What does this package contain ?
------------------------------

    This package contains exonerate and its libraries.
    Exonerate is a general purpose tool for biological
    sequence comparison.  The libraries are provided with
    the intention of providing general uti
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/usr/share/man/man1/exonerate-server.1.gz

exonerate-server(1)  sequence comparison server  exonerate-server(1)



NAME
       exonerate-server - a sequence comparison server for exonerate


SYNOPSIS
       exonerate-server [ options ] <index path>


DESCRIPTION
       exonerate-server is a multi-threaded server for the exonerate
       sequence alignment program.

       It uses a set of sequences and a corresponding index file  to
      
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/usr/share/man/man1/exonerate.1.gz

exonerate(1)          sequence comparison tool          exonerate(1)



NAME
       exonerate - a ge
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/usr/share/man/man1/fastaoverlap.1.gz

EXONERATE(1)                                            EXONERATE(1)



NAME
       exonerate - suit
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/usr/share/man/man1/fastautils.1.gz

fastautils(1) FASTA format file manipulation utilities fastautils(1)



NAME
       fastautils - FAS
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/usr/share/man/man1/ipcress.1.gz

ipcress(1)               PCR simulation tool              ipcress(1)



NAME
       ipcress - In-sil
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/usr/share/doc/exonerate/changelog.Debian.gz

exonerate (2.2.0-6) unstable; urgency=low

  * debian/patches/autoreconf.patch: Removed because not 
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