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clustalx

Multiple alignment of nucleic acid and protein sequences (graphical interface)

Variants:
This package offers a GUI interface for the Clustal multiple sequence alignment program. It provides an integrated environment for performing multiple sequence- and profile-alignments to analyse the results. The sequence alignment is displayed in a window on the screen. A versatile coloring scheme has been incorporated to highlight conserved features in the alignment. For professional presentations, one should use the texshade LaTeX package or boxshade.

The pull-down menus at the top of the window allow you to select all the options required for traditional multiple sequence and profile alignment. You can cut-and-paste sequences to change the order of the alignment; you can select a subset of sequences to be aligned; you can select a sub-range of the alignment to be realigned and inserted back into the original alignment.

An alignment quality analysis can be performed and low-scoring segments or exceptional residues can be highlighted.

Homepage:
Package version:2.1+lgpl-2
Architecture:kfreebsd-amd64
Distribution:Debian
Filename:clustalx_2.1+lgpl-2_kfreebsd-amd64.deb

/usr/share/doc/clustalx/README.Debian

Clustal X for Debian
────────────────────

Since version 2.1, Clustal is free software. The upstream archives have been
updated in December 2010 to clarify that, but their version number was not
changed. Because the Debian archive does not support this, the Debian package's
version is 2.1+lgpl.

 -- Charles Plessy <plessy@debian.org>  Sun, 27 Feb 2011 19:39
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/usr/share/man/man1/clustalx.1.gz

CLUSTALW(1)                                              CLUSTALW(1)



NAME
       clustalw - a multiple sequence alignment program


SYNOPSIS
       clustalw [options]

DESCRIPTION
       This  manual  page  documents  briefly  the clustalx command.
       This manual page was written for the Debian GNU/Linux distri‐
       bution  because  the  original program does not have a manual
       p
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/usr/share/doc/clustalx/changelog.Debian.gz

clustalx (2.1+lgpl-2) unstable; urgency=low

  [8b9662e] Update providing upgrade path to backports (Closes: #648812).
  [727f540] Corrected and normalised copyright file with config-edit.
  [fa455a0] Conforms to Policy version 3.9.2 (no changes needed).
  [9cd039b] Updated Homepage.
  [a36daf1] Rely on dpkg-dev for patching and removed build-dependancy on quilt.
  [51bde59] Support build-arch and
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/usr/share/doc/clustalx/changelog.gz

----------------------------------------------------------------------
Version 2.1
-----------------
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/usr/share/doc/clustalx/copyright

Format: http://dep.debian.net/deps/dep5/
Source: http://www.clustal.org/download/current/clustalx-2.
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