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mafft

Multiple alignment program for amino acid or nucleotide sequences

Variants:
MAFFT is a multiple sequence alignment program which offers three accuracy-oriented methods: * L-INS-i (probably most accurate; recommended for <200 sequences; iterative refinement method incorporating local pairwise alignment information), * G-INS-i (suitable for sequences of similar lengths; recommended for <200 sequences; iterative refinement method incorporating global pairwise alignment information), * E-INS-i (suitable for sequences containing large unalignable regions; recommended for <200 sequences), and five speed-oriented methods: * FFT-NS-i (iterative refinement method; two cycles only), * FFT-NS-i (iterative refinement method; max. 1000 iterations), * FFT-NS-2 (fast; progressive method), * FFT-NS-1 (very fast; recommended for >2000 sequences; progressive method with a rough guide tree), * NW-NS-PartTree-1 (recommended for ∼50,000 sequences; progressive method with the PartTree algorithm).
Homepage:
Package version:6.864-1
Architecture:kfreebsd-amd64
Distribution:Debian
Filename:mafft_6.864-1_kfreebsd-amd64.deb

/usr/share/man/man1/mafft-homologs.1.gz

MAFFT-HOMOLOGS(1)           Mafft Manual           MAFFT-HOMOLOGS(1)



NAME
       mafft-homologs - aligns sequences together with homologues
       automatically collected from SwissProt via NCBI BLAST

SYNOPSIS
       mafft-homologs [options] input [> output]

DESCRIPTION
       The accuracy of an alignment of a few distantly related
       sequences is considerably improved when being aligned

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/usr/share/man/man1/mafft.1.gz

MAFFT(1)                    Mafft Manual                    MAFFT(1)



THIS MANUAL IS FOR V6.2XX (2007)
       Recent versions (v6.8xx; 2010 Nov.) have more features than
       those described below.  See also the tips page at
       http://mafft.cbrc.jp/alignment/software/tips0.html

NAME
       mafft - Multiple alignment program for amino acid or
       nucleotide sequences

SYNOPSIS
       ma
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/usr/share/doc/mafft/changelog.Debian.gz

mafft (6.864-1) unstable; urgency=low

  * New upstream release.
  * Pre-Depends on dpkg (>= 1.15.6) for xz compression support (debian/control).
  * Renamed debian/README.Debian debian/README.test.
  * Track the new website in debian/watch.

 -- Charles Plessy <plessy@debian.org>  Thu, 12 Jan 2012 19:00:31 +0900

mafft (6.860-1) unstable; urgency=low

  * New upstream release.
  * Simplified debi
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/usr/share/doc/mafft/copyright

Format: http://dep.debian.net/deps/dep5/
Source: http://mafft.cbrc.jp/alignment/software/mafft-6.864
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