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proda

multiple alignment of protein sequences

Variants:
ProDA is a system for automated detection and alignment of homologous regions in collections of proteins with arbitrary domain architectures. Given an input set of unaligned sequences, ProDA identifies all homologous regions appearing in one or more sequences, and returns a collection of local multiple alignments for these regions.

ProDA is published in: Phuong T.M., Do C.B., Edgar R.C., and Batzoglou S. Multiple alignment of protein sequences with repeats and rearrangements. Nucleic Acids Research 2006 34(20), 5932-5942.

Homepage:
Package version:1.0-7
Architecture:kfreebsd-amd64
Distribution:Debian
Filename:proda_1.0-7_kfreebsd-amd64.deb

/usr/share/man/man1/proda.1.gz

PRODA(1)                                                    PRODA(1)



NAME
       proda - multiple alignment of protein sequences with repeats
       and rearrangements

SYNOPSIS
       proda [option] [mfafile] [> output]

DESCRIPTION
       This manual page documents briefly the proda command.

       proda (Protein Domain Aligner) is public domain software for
       generating multiple alignm
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/usr/share/doc/proda/changelog.Debian.gz

proda (1.0-7) unstable; urgency=low
  
  * debian/rules: swiched to CDBS (Closes: #486959).
    This delegates the support of parallel building to CDBS.
  * debian/control:
    - Added build-dependancy on CDBS.
    - Reverted to Standards-Version 3.7.3 because of lack of
      `debian/README.source' to explain the patch system.

 -- Charles Plessy <plessy@debian.org>  Fri, 04 Jul 2008 12:43:43 +09
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/usr/share/doc/proda/copyright

Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat
Upstream-Author: Phuong Tu Minh <phuongtm@fpt.com.vn>
 Do Chuong B. <chuongdo@cs.stanford.edu>
 Edgar Robert C. <bob@drive5.com>
 Batzoglou Serafim <serafim@cs.stanford.edu>
Original-Source-Location: http://proda.stanford.edu/proda_1_0.tar.gz
Packaged-By: David Paleino <d.paleino@gmail.com>
Packaged-Date: Tue, 24 Apr 2007 12:47
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