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bedtools

suite of utilities for comparing genomic features

Variants:
The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. Using BEDTools, one can develop sophisticated pipelines that answer complicated research questions by streaming several BEDTools together.

The groupBy utility is distribued in the filo package.

Homepage:
Package version:2.16.1-1
Architecture:kfreebsd-i386
Distribution:Debian
Filename:bedtools_2.16.1-1_kfreebsd-i386.deb

/usr/share/doc/bedtools/README.rst

==============================
          BEDTools         
==============================

Created by Aaron Quinlan Spring 2009.

Copyright 2009,2010,2011 Aaron Quinlan. All rights reserved.

Stable releases: http://code.google.com/p/bedtools

Repository:      https://github.com/arq5x/bedtools

Released under GNU public license version 2 (GPL v2).


Summary
-------
BEDTools is a collection of util
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/usr/share/doc/bedtools/changelog.Debian.gz

bedtools (2.16.1-1) unstable; urgency=low

  b7f2405 New upstream release.
  4add346 Corrected, updated and normalised Debian copyright.
  00b426d Conforms to Debian Policy 3.9.3.
  72c3c94 Verbose Debhelper.

 -- Charles Plessy <plessy@debian.org>  Fri, 16 Mar 2012 19:06:49 +0900

bedtools (2.15.0-1) unstable; urgency=low

  3f8e754 Upstream version 2.15.0.
  f27b295 Build-depend on python becaus
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/usr/share/doc/bedtools/changelog.gz

Version 2.14.1-3 (2-Nov-2011)

Bug Fixes
=========
1. Corrected the help for closestBed. It now correctly reads -io instead of -no.
2. Fixed regression in closestBed injected in version 2.13.4 whereby B features to the right of an A feature were missed.

New tool.
============
1. Added the multiIntersectBed tool for reporting common intervals among multiple **sorted** BED/GFF/VCF files.



Version
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/usr/share/doc/bedtools/copyright

Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Source: http://bedtools.go
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