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biosquid

utilities for biological sequence analysis

Variants:
SQUID is a library of C code functions for sequence analysis. It also includes a number of small utility programs to convert, show statistics, manipulate and do other functions on sequence files.

The original name of the package is "squid", but since there is already a squid on the archive (a proxy cache), it was renamed to "biosquid".

Homepage:
Package version:1.9g+cvs20050121-2
Architecture:kfreebsd-i386
Distribution:Debian
Filename:biosquid_1.9g+cvs20050121-2_kfreebsd-i386.deb

/usr/share/doc/biosquid/README.Debian

biosquid for Debian
-------------------

 The original name of the package is "squid", but since there is already
 a squid on the archive (a proxy cache) it was renamed to "biosquid", as
 suggested by Sean Eddy, upstream author of the program.

 Biosquid was compiled with LFS (Large File Support) enabled.

 Also, the "translate" binary was renamed to "stranslate", avoiding
 conflict with the binar
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/usr/share/man/man1/afetch.1.gz

afetch(1)                  Biosquid Manual                 afetch(1)



NAME
       afetch - retrieve an alignment from an alignment database


SYNOPSIS
       afetch [options] alignmentdb key


       afetch --index alignmentdb


DESCRIPTION
       afetch  retrieves  the  alignment named key from an alignment
       database in file alignmentdb.


       alignmentdb is a "multiple multiple alignm
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/usr/share/man/man1/alistat.1.gz

alistat(1)                 Biosquid Manual                alistat(1)



NAME
       alistat - show statistics for a multiple alignment file


SYNOPSIS
       alistat [options] alignfile


DESCRIPTION
       alistat  reads  a  multiple  sequence alignment from the file
       alignfile in any supported format (including SELEX, GCG  MSF,
       and  CLUSTAL),  and shows a number of simple statistics
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/usr/share/man/man1/compalign.1.gz

COMPALIGN(1)                                            COMPALIGN(1)



NAME
       compalign - comp
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/usr/share/man/man1/compstruct.1.gz

compstruct(1)              Biosquid Manual             compstruct(1)



NAME
       compstruct  -  c
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/usr/share/man/man1/revcomp.1.gz

REVCOMP(1)                                                REVCOMP(1)



NAME
       revcomp - revers
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/usr/share/man/man1/seqsplit.1.gz

SEQSPLIT(1)                                              SEQSPLIT(1)



NAME
       seqsplit - split
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/usr/share/man/man1/seqstat.1.gz

seqstat(1)                 Biosquid Manual                seqstat(1)



NAME
       seqstat - show s
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