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bowtie2

ultrafast memory-efficient short read aligner

Variants:
is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes.

Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes

Homepage:
Package version:2.0.0-beta6-3
Architecture:kfreebsd-i386
Distribution:Debian
Filename:bowtie2_2.0.0-beta6-3_kfreebsd-i386.deb

/usr/share/man/man1/bowtie2-align.1.gz

BOWTIE2-ALIGN(1)            User Commands           BOWTIE2-ALIGN(1)



NAME
       bowtie2-align  -  ultrafast  and  memory-efficient  tool  for
       aligning sequencing reads to long reference sequences

DESCRIPTION
       Bowtie  2  version  2.0.0-beta6  by  Ben   Langmead   (blang‐
       mea@jhsph.edu) Usage:

              bowtie2-align [options]* -x <bt2-idx> {-1 <m1> -2 <m2>
          
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/usr/share/man/man1/bowtie2-build.1.gz

BOWTIE2-BUILD(1)            User Commands           BOWTIE2-BUILD(1)



NAME
       bowtie2-build - building a colorspace index for bowtie2

SYNOPSIS
       bowtie2-build [options]* <reference_in> <bt2_index_base>

DESCRIPTION
       Bowtie   2   version  2.0.0-beta6  by  Ben  Langmead  (blang‐
       mea@jhsph.edu)

       reference_in
              comma-separated list of files with ref sequen
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/usr/share/man/man1/bowtie2-inspect.1.gz

BOWTIE2-INSPECT(1)          User Commands         BOWTIE2-INSPECT(1)



NAME
       bowtie2-inspect - extracts information from a bowtie2 index

SYNOPSIS
       bowtie2-inspect [options]* <bt2_base>

DESCRIPTION
       Bowtie   2   version  2.0.0-beta6  by  Ben  Langmead  (blang‐
       mea@jhsph.edu)

       <bt2_base>
              bt2 filename minus trailing .1.bt2/.2.bt2

              By de
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/usr/share/man/man1/bowtie2.1.gz

BOWTIE2-ALIGN(1)            User Commands           BOWTIE2-ALIGN(1)



NAME
       bowtie2-align - 
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/usr/share/doc/bowtie2/changelog.Debian.gz

bowtie2 (2.0.0-beta6-3) unstable; urgency=low

  * normalized architecture detection.
    For exampl
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/usr/share/doc/bowtie2/changelog.gz

Bowtie 2 NEWS
=============

Bowtie 2 is now available for download from the project website,
http:/
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/usr/share/doc/bowtie2/copyright

Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: Bowtie2
Ups
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