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cmtk

Computational Morphometry Toolkit

Variants:
A software toolkit for computational morphometry of biomedical images, CMTK comprises a set of command line tools and a back-end general-purpose library for processing and I/O.

The command line tools primarily provide the following functionality: registration (affine and nonrigid; single and multi-channel; pairwise and groupwise), image correction (MR bias field estimation; interleaved image artifact correction), processing (filters; combination of segmentations via voting and STAPLE; shape-based averaging), statistics (t-tests; general linear regression).

Homepage:
Package version:2.2.2-2
Architecture:kfreebsd-i386
Distribution:Debian
Filename:cmtk_2.2.2-2_kfreebsd-i386.deb

/usr/share/doc/cmtk/README.Debian

CMTK for Debian
---------------

CMTK provides a collection of command line tools which are not
installed directly into /usr/bin/ by this package but rather located
under /usr/lib/cmtk/bin to avoid possible naming conflicts with other
software packages.  There are two possible ways to invoke those tools:

 - /usr/bin/cmtk helper script serves as an entry point to the toolkit.
   Just prepend with 
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/usr/share/doc/cmtk/README.txt

The Computational Morphometry Toolkit
==========================================================================


Release Notes -- CMTK 2.2.2
===========================

This release adds more transformation fitting tools and completes support for
computing SNR and CNR from images of the ADNI phantom. 

A new tool, "streamxform" will ultimately replace the rather poorly-designed
"gregxform" too
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/usr/share/man/man1/cmtk-asegment.1.gz

asegment(1)     The Computational Morphometry Toolkit    asegment(1)



NAME
       asegment - Atlas-based segmentation

SYNOPSIS
       asegment TargetImage AtlasImage AtlasLabels OutputImage

DESCRIPTION
       Register a target image to an atlas, using affine followed by
       nonrigid B-spline registration, then reformat the atlas label
       map to the target image.

OPTIONS
   Global Toolk
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/usr/share/man/man1/cmtk-asegment_sri24.1.gz

asegment_sri24(1The Computational Morphometry Toolkasegment_sri24(1)



NAME
       asegment_sri24 -
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/usr/share/man/man1/cmtk-average_affine.1.gz

average_affine(1The Computational Morphometry Toolkaverage_affine(1)



NAME
       average_affine -
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/usr/share/man/man1/cmtk-average_images.1.gz

average_images(1The Computational Morphometry Toolkaverage_images(1)



NAME
       average_images -
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/usr/share/man/man1/cmtk-average_labels.1.gz

average_labels(1The Computational Morphometry Toolkaverage_labels(1)



NAME
       average_labels -
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/usr/share/man/man1/cmtk-avg_adm.1.gz

avg_adm(1)      The Computational Morphometry Toolkit     avg_adm(1)



NAME
       avg_adm - Averag
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Browse inside cmtk_2.2.2-2_kfreebsd-i386.deb

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