Segment-based multiple sequence alignment
DIALIGN2 is a command line tool to perform multiple alignment of
protein or DNA sequences. It constructs alignments from gapfree pairs
of similar segments of the sequences. This scoring scheme for
alignments is the basic difference between DIALIGN and other global or
local alignment methods. Note that DIALIGN does not employ any kind of
gap penalty. It has been published by Morgenstern B. in
Bioinformatics. 1999 Mar;15(3):211-8.
dialign for Debian
In order to make dialign work 'out of the box', I hard-coded the path
of the substitution matrices to /usr/share/dialign, where the package
installs them. Hence, it is not necessary to set the DIALIGN2_DIR
environment variable. Setting it overrides the default path I
-- Charles Plessy <firstname.lastname@example.org>, Sun, 9 Apr 2006 23:53:26
DIALIGN(1) User Manual DIALIGN(1)
dialign2-2 - Multiple alignment program using the segment-to-
dialign2-2 [options] [seq_file]
seq_file is the name of the input sequence file; this must be
a multiple FASTA file (all sequences in one file).
dialign2-2 is a program that cons
dialign (2.2.1-3) unstable; urgency=low
* Changed the doc-base section according to the new policy.
* Updated my email address. (debian/control, debian/copyright,
-- Charles Plessy <email@example.com> Sat, 17 May 2008 18:10:28 +0900
dialign (2.2.1-2) unstable; urgency=low
[ Charles Plessy ]
- Added URIs to subersion repository.
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