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loki

MCMC linkage analysis on general pedigrees

Performs Markov chain Monte Carlo multipoint linkage analysis on large, complex pedigrees. The current package supports analyses on quantitative traits only, although this restriction will be lifted in later versions. Joint estimation of QTL number, position and effects uses Reversible Jump MCMC. It is also possible to perform affected only IBD sharing analyses.

The homepage of this project used to be at http://loki.homeunix.net but the project is dead now and the homepage vanished. The Homepage field above points to the web archive.

Homepage:
Package version:2.4.7.4-4
Architecture:kfreebsd-i386
Distribution:Debian
Filename:loki_2.4.7.4-4_kfreebsd-i386.deb

/usr/share/doc/loki/README

Loki 2.4.6 - Simon Heath - April 2003

This package contains the source and examples for Loki version 2.3.  Loki
performs Markov chain Monte Carlo (MCMC) multivariate linkage analysis on
general pedigrees.  The current package supports analyses on quantitative
traits only, although this restriction will be lifted in later versions. For
more details see the files in the docs/ subdirectory.  Changes
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/usr/share/doc/loki/README.Debian

loki for Debian
---------------

Please note that loki is dead upstream, that means the development has
stopped and even the homepage http://loki.homeunix.net/ is not available any more.
You can read the content of the old homepage in the web archive at
   http://web.archive.org/web/20051220050931/http://loki.homeunix.net/
If you want to download the original source tarball, try the bzipped
versio
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/usr/share/doc/loki/README.known_systems

loki_2.3 has been compiled and tested on the following systems:

Solaris sparc 5.8/5.7 (gcc)
Solaris intel 5.8 (gcc)
FreeBSD intel 4.0-4.5 (gcc)
OpenBSD intel 2.7-3.1 (gcc)
OSF1 V4.0 alpha (gcc,cc)
Linux intel 2.2,2.4 (gcc)
Linux sparc 2.2,2.4 (gcc)
Linux alpha 2.2,2.4 (gcc,ccc [dec compiler])
Irix R10000 6.5 (cc - 32 bit)
Irix R10000 6.5 (cc - 64 bit)
MacOSX G4 10.04,10.1 (gcc)
AIX 4.3.3 (gcc)

I
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/usr/share/doc/loki/README.multiple_records

Multiple records in Loki - change in default behaviour

The default for all variables is now CONSTAN
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/usr/share/doc/loki/README.parallel_runs

Parallel jobs in Loki

There is no support for running an individual Loki job in parallel.
However, 
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/usr/share/man/man1/loki.1.gz

LOKI(1)                                                      LOKI(1)



NAME
       loki - Reversibl
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/usr/share/doc/loki/changelog.Debian.gz

loki (2.4.7.4-4) unstable; urgency=low

  * Fixed lokisrc/param_lex.l and regenerated C file to solv
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/usr/share/doc/loki/changelog.gz

4 Jun 2004(SCH)
 - Fixed bug when using si_mode with QTLs and lm_ratio>0
3 Jun 2004(SCH)
 - Fixed bu
more»

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