Reconstruction of phylogenetic trees by maximum likelihood
TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that
implements a fast tree search algorithm, quartet puzzling, that allows
analysis of large data sets and automatically assigns estimations of support
to each internal branch. TREE-PUZZLE also computes pairwise maximum
likelihood distances as well as branch lengths for user specified trees.
Branch lengths can also be calculated under the clock-assumption. In
addition, TREE-PUZZLE offers a novel method, likelihood mapping, to
investigate the support of a hypothesized internal branch without
computing an overall tree and to visualize the phylogenetic content of
a sequence alignment.
TREE-PUZZLE is a computer program to reconstruct phylogenetic trees
from molecular sequence data by maximum likelihood. It implements a
fast tree search algorithm, quartet puzzling, that allows analysis of
large data sets and automatically assigns estimations of support to each
internal branch. TREE-PUZZLE also computes pairwise maximum likelihood
distances as well as branch le
tree-puzzle for Debian
tree-puzzle replaces the previous package puzzle, since the program was
renamed by upstream because of a name conflict with another program.
The command and manpage for tree-puzzle are renamed to tree-puzzle as well!
Now also the parallelized version is packaged in the package tree-ppuzzle.
-- Andreas Tille <firstname.lastname@example.org> Mon, 5 Nov 2001 11:0
tree-puzzle - Reconstruction of phylogenetic trees by maximum
This manual page documents briefly the tree-puzzle command.
This manual page was written for the Debian GNU/Linux distri‐
bution because the original program does not h
tree-puzzle (5.2-5) unstable; urgency=low
* Standards-Version: 3.8.1 (no changes needed)
Version date what has been changed
missing quartet handling
since 1999 by Heiko A. Schmidt, Korbinian Strimmer,
Martin Vingron, Arndt von Haesele
This package was debianized by -- Andreas Tille <email@example.com> on
Mon, 5 Nov 2001 11:00:04 +01
Browse inside tree-puzzle_5.2-5_kfreebsd-i386.deb