tree-puzzle
Reconstruction of phylogenetic trees by maximum likelihood
TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that
implements a fast tree search algorithm, quartet puzzling, that allows
analysis of large data sets and automatically assigns estimations of support
to each internal branch. TREE-PUZZLE also computes pairwise maximum
likelihood distances as well as branch lengths for user specified trees.
Branch lengths can also be calculated under the clock-assumption. In
addition, TREE-PUZZLE offers a novel method, likelihood mapping, to
investigate the support of a hypothesized internal branch without
computing an overall tree and to visualize the phylogenetic content of
a sequence alignment.
| Homepage: | http://www.tree-puzzle.de |
| Package version: | 5.2-5 |
| Architecture: | kfreebsd-i386 |
| Distribution: | Debian |
| Filename: | tree-puzzle_5.2-5_kfreebsd-i386.deb |
/usr/share/doc/tree-puzzle/README
TREE-PUZZLE 5.2
TREE-PUZZLE is a computer program to reconstruct phylogenetic trees
from molecular sequence data by maximum likelihood. It implements a
fast tree search algorithm, quartet puzzling, that allows analysis of
large data sets and automatically assigns estimations of support to each
internal branch. TREE-PUZZLE also computes pairwise maximum likelihood
distances as well as branch le
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/usr/share/doc/tree-puzzle/README.Debian
tree-puzzle for Debian
----------------------
tree-puzzle replaces the previous package puzzle, since the program was
renamed by upstream because of a name conflict with another program.
The command and manpage for tree-puzzle are renamed to tree-puzzle as well!
Now also the parallelized version is packaged in the package tree-ppuzzle.
-- Andreas Tille <tille@debian.org> Mon, 5 Nov 2001 11:0
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/usr/share/man/man1/tree-puzzle.1.gz
TREE-PUZZLE(1) TREE-PUZZLE(1)
NAME
tree-puzzle - Reconstruction of phylogenetic trees by maximum
likelihood
SYNOPSIS
tree-puzzle
DESCRIPTION
This manual page documents briefly the tree-puzzle command.
This manual page was written for the Debian GNU/Linux distri‐
bution because the original program does not h
more»/usr/share/doc/tree-puzzle/changelog.Debian.gz
tree-puzzle (5.2-5) unstable; urgency=low
* Standards-Version: 3.8.1 (no changes needed)
* Buil
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/usr/share/doc/tree-puzzle/changelog.gz
ChangeLog
($Id$)
Version date what has been changed
TODO:
missing quartet handling
missing qu
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/usr/share/doc/tree-puzzle/AUTHORS
since 1999 by Heiko A. Schmidt, Korbinian Strimmer,
Martin Vingron, Arndt von Haesele
more»/usr/share/doc/tree-puzzle/copyright
This package was debianized by -- Andreas Tille <tille@debian.org> on
Mon, 5 Nov 2001 11:00:04 +01
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Browse inside tree-puzzle_5.2-5_kfreebsd-i386.deb
Download tree-puzzle_5.2-5_kfreebsd-i386.deb
