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disulfinder

cysteines disulfide bonding state and connectivity predictor

Variants:
'disulfinder' is for predicting the disulfide bonding state of cysteines and their disulfide connectivity starting from sequence alone. Disulfide bridges play a major role in the stabilization of the folding process for several proteins. Prediction of disulfide bridges from sequence alone is therefore useful for the study of structural and functional properties of specific proteins. In addition, knowledge about the disulfide bonding state of cysteines may help the experimental structure determination process and may be useful in other genomic annotation tasks.

'disulfinder' predicts disulfide patterns in two computational stages: (1) the disulfide bonding state of each cysteine is predicted by a BRNN-SVM binary classifier; (2) cysteines that are known to participate in the formation of bridges are paired by a Recursive Neural Network to obtain a connectivity pattern.

Homepage:
Package version:1.2.11-2+b1
Architecture:mips
Distribution:Debian
Filename:disulfinder_1.2.11-2+b1_mips.deb

/usr/share/doc/disulfinder/README.Debian

Disulfinder
===========

References
----------
* A. Ceroni, A. Passerini, A. Vullo and P. Frasconi. DISULFIND: a
  Disulfide Bonding State and Cysteine Connectivity Prediction Server,
  Nucleic Acids Research, 34(Web Server issue):W177-W181, 2006.

For the disulphide connectivity predictor see:

* A. Vullo and P. Frasconi. Disulfide Connectivity Prediction using
  Recursive Neural Networks and Evo
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/usr/share/man/man1/disulfinder.1.gz

DISULFINDER(1)              User Commands             DISULFINDER(1)



NAME
       disulfinder - cysteines disulfide bonding state and
       connectivity predictor

SYNOPSIS
       disulfinder [OPTIONS]

DESCRIPTION
       'disulfinder' is for predicting the disulfide bonding state
       of cysteines and their disulfide connectivity starting from
       sequence alone. Disulfide bridges play a 
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/usr/share/doc/disulfinder/changelog.Debian.gz

disulfinder (1.2.11-2+b1) sid; urgency=low

  * Binary-only non-maintainer upload for mips; no source changes.
  * Rebuild against boost1.49

 -- Debian Build Daemon <buildd_mips-ball@buildd.debian.org>  Sat, 07 Apr 2012 13:50:12 +0000

disulfinder (1.2.11-2) unstable; urgency=low

  * added mkdir debian/disulfinder-data/usr/share/disulfinder/ to
    debian/rules before moving Models to disulfinde
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/usr/share/doc/disulfinder/changelog.gz

disulfinder (1.2.11) unstable; urgency=low

  * examples now installed into $(docdir)/examples

 -- 
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/usr/share/doc/disulfinder/copyright

This package was debianized by Laszlo Kajan <lkajan@rostlab.org> on
Fri, 30 Oct 2009 12:12:21 +0100.
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