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High-performance lib for Bayesian and Maximum Likelihood phylogenetics

BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages. It can make use of highly-parallel processors such as those in graphics cards (GPUs) found in many PCs.

The project involves an open API and fast implementations of a library for evaluating phylogenetic likelihoods (continuous time Markov processes) of biomolecular sequence evolution.

The aim is to provide high performance evaluation 'services' to a wide range of phylogenetic software, both Bayesian samplers and Maximum Likelihood optimizers. This allows these packages to make use of implementations that make use of optimized hardware such as graphics processing units.

This package contains the Java interface.

Package version:1.0-6


libhmsbeagle (1.0-6) unstable; urgency=low

  * debian/upstream:
     - Make authors BibTeX compliant
     - Add some publication info (volume, number, pages)
  * debian/get-orig-source: Try harder to get reproducible tarballs
  * debian/patches/gcc-4.7.patch: Fix gcc 4.7 build issue
    Closes: #672015

 -- Andreas Tille <>  Wed, 09 May 2012 15:08:00 +0200

libhmsbeagle (1.0-5) un


Upstream-Name: beagle-lib
Upstream-Contact: Aaron Darling <>

Files: *
Copyright: © 2009-2011 The BEAGLE Developer group
License: LGPL-3+
 This program is free software: you can redistribute it and/or modify
 it under the terms of 

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