Computational Morphometry Toolkit
A software toolkit for computational morphometry of biomedical
images, CMTK comprises a set of command line tools and a back-end
general-purpose library for processing and I/O.
The command line tools primarily provide the following functionality:
registration (affine and nonrigid; single and multi-channel; pairwise
and groupwise), image correction (MR bias field estimation;
interleaved image artifact correction), processing (filters;
combination of segmentations via voting and STAPLE; shape-based
averaging), statistics (t-tests; general linear regression).
CMTK for Debian
CMTK provides a collection of command line tools which are not
installed directly into /usr/bin/ by this package but rather located
under /usr/lib/cmtk/bin to avoid possible naming conflicts with other
software packages. There are two possible ways to invoke those tools:
- /usr/bin/cmtk helper script serves as an entry point to the toolkit.
Just prepend with
The Computational Morphometry Toolkit
Release Notes -- CMTK 2.2.2
This release adds more transformation fitting tools and completes support for
computing SNR and CNR from images of the ADNI phantom.
A new tool, "streamxform" will ultimately replace the rather poorly-designed
asegment(1) The Computational Morphometry Toolkit asegment(1)
asegment - Atlas-based segmentation
asegment TargetImage AtlasImage AtlasLabels OutputImage
Register a target image to an atlas, using affine followed by
nonrigid B-spline registration, then reformat the atlas label
map to the target image.
asegment_sri24(1The Computational Morphometry Toolkasegment_sri24(1)
average_affine(1The Computational Morphometry Toolkaverage_affine(1)
average_images(1The Computational Morphometry Toolkaverage_images(1)
average_labels(1The Computational Morphometry Toolkaverage_labels(1)
avg_adm(1) The Computational Morphometry Toolkit avg_adm(1)
avg_adm - Averag
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