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bowtie

ultrafast memory-efficient short read aligner

Variants:
This package addresses the problem to interpret the results from the latest (2010) DNA sequencing technologies. Those will yield fairly short stretches and those cannot be interpreted directly. It is the challenge for tools like Bowtie to give a chromosomal location to the short stretches of DNA sequenced per run.

Bowtie aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB for paired-end).

Homepage:
Package version:0.12.7-3
Architecture:powerpc
Distribution:Debian
Filename:bowtie_0.12.7-3_powerpc.deb

/usr/share/doc/bowtie/NEWS.gz

Bowtie: an Ultrafast, Lightweight Short Read Aligner

Bowtie NEWS
===========

   Bowtie is now available for download.  0.9.0 is the first version to
be released under the OSI Artistic License (see `COPYING') and freely
available to the public for download.  The current version is 0.12.7.

Reporting Issues
================

Please report any issues using the Sourceforge bug tracker:

  https://so
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/usr/share/man/man1/bowtie-build.1.gz

BOWTIE-BUILD(1)             User Commands            BOWTIE-BUILD(1)



NAME
       bowtie-build - building a colorspace index for bowtie

SYNOPSIS
       bowtie-build [options]* <reference_in> <ebwt_outfile_base>

DESCRIPTION
       reference_in
              comma-separated list of files with ref sequences

       ebwt_outfile_base
              write Ebwt data to files with this dir/basename

O
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/usr/share/man/man1/bowtie-inspect.1.gz

BOWTIE-INSPECT(1)           User Commands          BOWTIE-INSPECT(1)



NAME
       bowtie-inspect - extracts information from a bowtie index

SYNOPSIS
       bowtie-inspect [options]* <ebwt_base>

DESCRIPTION
       <ebwt_base>
              ebwt filename minus trailing .1.ebwt/.2.ebwt

              By  default,  prints  FASTA records of the indexed nu‐
              cleotide sequences to stan
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/usr/share/man/man1/bowtie.1.gz

BOWTIE(1)                   User Commands                  BOWTIE(1)



NAME
       bowtie - ultrafa
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/usr/share/doc/bowtie/changelog.Debian.gz

bowtie (0.12.7-3) unstable; urgency=low

  * debian/patches/use-dpkg-buildflags.patch: Regard LDFLAG
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/usr/share/doc/bowtie/copyright

Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: Bowtie
Upst
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