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kalign

Global and progressive multiple sequence alignment

Variants:
Kalign is a command line tool to perform multiple alignment of biological sequences. It employs the Muth-Manber string-matching algorithm, to improve both the accuracy and speed of the alignment. It uses global, progressive alignment approach, enriched by employing an approximate string-matching algorithm to calculate sequence distances and by incorporating local matches into the otherwise global alignment.
Homepage:
Package version:1:2.03+20110620-2
Architecture:powerpc
Distribution:Debian
Filename:kalign_2.03+20110620-2_powerpc.deb

/usr/share/doc/kalign/README

-----------------------------------------------------------------------
  Kalign version 2.03, Copyright (C) 2006 Timo Lassmann

  http://msa.cgb.ki.se/
  timolassmann@gmail.com

	This program is free software; you can redistribute it and/or modify
	it under the terms of the GNU General Public License as published by
	the Free Software Foundation; either version 2 of the License, or
	any later ver
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/usr/share/man/man1/kalign.1.gz

KALIGN(1)                Kalign User Manual                KALIGN(1)



NAME
       kalign - performs multiple alignment of biological sequences.

SYNOPSIS
       kalign [infile.fasta] [outfile.fasta] [Options]

       kalign [-i infile.fasta] [-o outfile.fasta] [Options]

       kalign [< infile.fasta] [> outfile.fasta] [Options]

DESCRIPTION
       Kalign is a command line tool to perform multip
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/usr/share/doc/kalign/changelog.Debian.gz

kalign (1:2.03+20110620-2) unstable; urgency=low

  [ Charles Plessy ]
  * renamed debian/upstream-metadata.yaml to debian/upstream

  [ Andreas Tille ]
  * debian/upstream:
     - Added another citation from tasks file
     - Fixed Homepage
  * debian/source/format: 3.0 (quilt)
  * debian/watch: Fixed hint to download URL
  * debian/control:
     - Fixed Homepage
     - Standards-Version: 3.9.3 (
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/usr/share/doc/kalign/copyright

Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: Kalign
Upst
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