Includes programs:
- BppML for maximum likelihood analysis,
- BppSeqGen for sequences simulation,
- BppAncestor for ancestral states reconstruction,
- BppDist for distance methods,
- BppPars for parsimony analysis,
- BppSeqMan for file conversion and sequence manipulation,
- BppConsense for building consensus tree and computing bootstrap values,
- BppPhySamp for phylogenetic sampling,
- BppReRoot for tree rerooting.
- BppTreeDraw for tree drawing.
- BppAlnScore for comparing alignments and computing alignment scores.
BPPALNSCORE(1) BPPALNSCORE(1)
NAME
bppalnscore - Bio++ alignment scoring
SYNOPSIS
bppalnscore [options]
AVAILABILITY
All UNIX flavors
DESCRIPTION
bppalnscore compares two alignment and compute corresponding
column scores. Scores can be output to a text file, and/or
used to generate a site selection t
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BPPANCESTOR(1) BPPANCESTOR(1)
NAME
bppml - Ancestral sequence reconstruction with Bio++
SYNOPSIS
bppancestor [options]
AVAILABILITY
All UNIX flavors
DESCRIPTION
bppancestor performs ancestral sequence reconstructions under
a large variety of models, including non-homogeneous ones.
OPTIONS
You should refer t
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