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bwa

Burrows-Wheeler Aligner

Variants:
Burrows-Wheeler Aligner (BWA) is a program that aligns relatively short nucleotide sequences against a long reference sequence such as the human genome. It implements two algorithms, bwa-short and BWA-SW. The former works for query sequences shorter than 200 bp and the latter for longer sequences up to around 100 kbp. Both algorithms do gapped alignment. They are usually more accurate and faster on queries with low error rates.
Homepage:
Package version:0.6.2-1
Architecture:s390x
Distribution:Debian
Filename:bwa_0.6.2-1_s390x.deb

/usr/share/doc/bwa/README

Released packages can be downloaded from SourceForge.net:

  http://sourceforge.net/projects/bio-bwa/files/

Introduction and FAQ are available at:

  http://bio-bwa.sourceforge.net

Manual page at:

  http://bio-bwa.sourceforge.net/bwa.shtml

Mailing list:

  bio-bwa-help@lists.sourceforge.net

To sign up:

  http://sourceforge.net/mail/?group_id=276243

Publications (Open Access):

  http://www.
more»

/usr/share/doc/bwa/NEWS.Debian.gz

bwa (0.6.0-1) unstable; urgency=low

    Branch 0.6.x index data structure changed and is incompatible with index
    data structure previously used by branch 0.5.x. You will need to rebuild
    all your indexes.

 -- Carlos Borroto <carlos.borroto@gmail.com>  Thu, 22 Jun 2012 15:53:58 -0400

/usr/share/doc/bwa/NEWS.gz

Release 0.6.2 (19 June, 2012)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

This is largely a bug-fix release. Notable changes in BWA-short and BWA-SW:

 * Bugfix: BWA-SW may give bad alignments due to incorrect band width.

 * Bugfix: A segmentation fault due to an out-of-boundary error. The fix is a
   temporary solution. The real cause has not been identified.

 * Attempt to read index from prefix.64.bwt, suc
more»

/usr/share/man/man1/bwa.1.gz

bwa(1)                  Bioinformatics tools                  bwa(1)



NAME
       bwa - Burrows-Wh
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/usr/share/doc/bwa/changelog.Debian.gz

bwa (0.6.2-1) unstable; urgency=low

  [ Carlos Borroto ]
  * New upstream release

  [ Andreas Till
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/usr/share/doc/bwa/changelog.gz

------------------------------------------------------------------------
r1605 | lh3 | 2010-12-29 20
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/usr/share/doc/bwa/copyright

Format: http://dep.debian.net/deps/dep5/
Source: http://sourceforge.net/projects/bio-bwa/files/bwa-0
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