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clonalframe

inference of bacterial microevolution using multilocus sequence data

Variants:
ClonalFrame identifies the clonal relationships between the members of a sample, while also estimating the chromosomal position of homologous recombination events that have disrupted the clonal inheritance.

ClonalFrame can be applied to any kind of sequence data, from a single fragment of DNA to whole genomes. It is well suited for the analysis of MLST data, where 7 gene fragments have been sequenced, but becomes progressively more powerful as the sequenced regions increase in length and number up to whole genomes. However, it requires the sequences to be aligned. If you have genomic data that is not aligned, we recommend using Mauve which produces alignment of whole bacterial genomes in exactly the format required for analysis with ClonalFrame.

Homepage:
Package version:1.2-3
Architecture:s390x
Distribution:Debian
Filename:clonalframe_1.2-3_s390x.deb

/usr/share/man/man1/ClonalFrame.1.gz

ClonalFrame(1)                                        ClonalFrame(1)



NAME
       ClonalFrame  -  inference  of  bacterial microevolution using
       multilocus sequence data

SYNOPSIS
       ClonalFrame [OPTIONS] inputfile outputfile

DESCRIPTION
       ClonalFrame identifies the clonal relationships  between  the
       members  of  a  sample, while also estimating the chromosomal
       posi
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/usr/share/doc/clonalframe/changelog.Debian.gz

clonalframe (1.2-3) unstable; urgency=low

  [ A. Costa ]
  * Corrected typos in debian/ClonalFrame.1 (Closes: #650474).

  [ Andreas Tille ]
  * debian/control:
    - Fixed Vcs fields
    - Remove quilt from build-depends

 -- Andreas Tille <tille@debian.org>  Sat, 07 Jan 2012 09:26:15 +0100

clonalframe (1.2-2) unstable; urgency=low

  * Fix gcc-4.6 build issue (thanks to Sebastian Ramacher
    
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/usr/share/doc/clonalframe/copyright

Format: http://dep.debian.net/deps/dep5/
Upstream-Name: ClonalFrame
Upstream-Contact: Xavier Didelot <xavier.didelot@gmail.com>
Source: http://www.xavierdidelot.xtreemhost.com/clonalframe.htm 

Files: *
Copyright: © 2009-2010  Xavier Didelot <xavier.didelot@gmail.com>
License: GPL-2+
 ClonalFrame is free software; you can redistribute it and/or modify
 it under the terms of the GNU General Public
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