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fasttree

phylogenetic trees from alignments of nucleotide or protein sequences

Variants:
FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. It handles alignments with up to a million of sequences in a reasonable amount of time and memory. For large alignments, FastTree is 100-1,000 times faster than PhyML 3.0 or RAxML 7.

FastTree is more accurate than PhyML 3 with default settings, and much more accurate than the distance-matrix methods that are traditionally used for large alignments. FastTree uses the Jukes-Cantor or generalized time-reversible (GTR) models of nucleotide evolution and the JTT (Jones-Taylor-Thornton 1992) model of amino acid evolution. To account for the varying rates of evolution across sites, FastTree uses a single rate for each site (the "CAT" approximation). To quickly estimate the reliability of each split in the tree, FastTree computes local support values with the Shimodaira-Hasegawa test (these are the same as PhyML 3's "SH-like local supports").

This package contains a single threaded version (fasttree) and a parallel version which uses OpenMP (fasttreMP).

Homepage:
Package version:2.1.4-1
Architecture:s390x
Distribution:Debian
Filename:fasttree_2.1.4-1_s390x.deb

/usr/share/man/man1/fasttree.1.gz

fasttree(1)                 User Commands                fasttree(1)



NAME
       fasttree  -  create phylogenetic trees from alignments of nu‐
       cleotide or protein sequences

DESCRIPTION
       fasttree infers approximately-maximum-likelihood phylogenetic
       trees  from alignments of nucleotide or protein sequences. It
       handles alignments with up to a million  of  sequences  i
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/usr/share/man/man1/fasttreeMP.1.gz

fasttreeMP(1)               User Commands              fasttreeMP(1)



NAME
       fasttreeMP - create phylogenetic trees from alignments of nu‐
       cleotide or protein sequences (openMP version)

DESCRIPTION
       fasttreeMP infers  approximately-maximum-likelihood  phyloge‐
       netic   trees   from  alignments  of  nucleotide  or  protein
       sequences. It handles alignments with 
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/usr/share/doc/fasttree/changelog.Debian.gz

fasttree (2.1.4-1) unstable; urgency=low

  * Initial release (Closes: #677648)

 -- Thorsten Alteholz <debian@alteholz.de>  Fri, 15 Jun 2012 19:52:56 +0200

/usr/share/doc/fasttree/changelog.gz

Version 2.1.4: July 28, 2011

	Added the -quote option (thanks to Samuel Shepard at the CDC)

	Added
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/usr/share/doc/fasttree/copyright

Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: FastTree
So
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