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maq

maps short fixed-length polymorphic DNA sequence reads to reference sequences

Variants:
Maq (short for Mapping and Assembly with Quality) builds mapping assemblies from short reads generated by the next-generation sequencing machines. It was particularly designed for Illumina-Solexa 1G Genetic Analyzer, and has a preliminary functionality to handle ABI SOLiD data. Maq is previously known as mapass2.

Developmemt of Maq stopped in 2008. Its successors are BWA and SAMtools.

Homepage:
Package version:0.7.1-5
Architecture:s390x
Distribution:Debian
Filename:maq_0.7.1-5_s390x.deb

/usr/share/doc/maq/README

Mapass2 is a software that builds mapping assemblies from short reads
generated by the next-generation sequencing machines. It is particularly
designed for Illumina-Solexa 1G Genetic Analyzer, which typically
generates reads 25-35bp in length.

Mapass2 first aligns reads to reference sequences and then calls the
consensus. At the mapping stage, maq performs ungapped alignment.  For
single-end rea
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/usr/share/man/man1/maq.1.gz

MAQ(1)                  Bioinformatics Tools                  MAQ(1)



NAME
       Maq - Mapping and Assembly with Qualities

SYNOPSIS
       maq command [options] arguments

       maq.pl command [options] arguments

DESCRIPTION
       Maq is a software that builds mapping assemblies from short
       reads generated by the next-generation sequencing machines.
       It is particularly designed 
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/usr/share/doc/maq/changelog.Debian.gz

maq (0.7.1-5) unstable; urgency=low

  [ Charles Plessy ]
  * renamed debian/upstream-metadata.yaml to debian/upstream

  [ Andreas Tille ]
  * debian/upstream:
     - Removed duplicated entry DOI
     - Moved PMID to references
  * debian/source/format: 3.0 (quilt)
  * debian/reference: removed because references are kept in
    debian/upstream (also removed from debian/docs)
  * debian/control:

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/usr/share/doc/maq/changelog.gz

------------------------------------------------------------------------
r666 | lh3lh3 | 2008-09-21 
more»

/usr/share/doc/maq/AUTHORS

Heng Li wrote all the codes of this project.


/usr/share/doc/maq/copyright

Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Source: http://downloads.s
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