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fastx-toolkit

FASTQ/A short nucleotide reads pre-processing tools

Variants:
The FASTX-Toolkit is a collection of command line tools for preprocessing short nucleotide reads in FASTA and FASTQ formats, usually produced by Next-Generation sequencing machines. The main processing of such FASTA/FASTQ files is mapping (aligning) the sequences to reference genomes or other databases using specialized programs like BWA, Bowtie and many others. However, it is sometimes more productive to preprocess the FASTA/FASTQ files before mapping the sequences to the genome—manipulating the sequences to produce better mapping results. The FASTX-Toolkit tools perform some of these preprocessing tasks.
Homepage:
Package version:0.0.13.2-1
Architecture:sparc
Distribution:Debian
Filename:fastx-toolkit_0.0.13.2-1_sparc.deb

/usr/share/doc/fastx-toolkit/README.Debian

FastX Toolkit for Debian
------------------------

The manpages in this package are autogenerated via help2man which does
not always result in a pretty layout.  To get a better layout as well
as some big picture about all tools it is advisable to visit

   http://hannonlab.cshl.edu/fastx_toolkit/commandline.html

You might also like to have a look at

   http://hannonlab.cshl.edu/fastx_toolkit/gal
more»

/usr/share/doc/fastx-toolkit/README.gz

FASTX-Toolkit
=============


Short Summary
===============

The FASTX-Toolkit is a collection of command line tools for Short-Reads 
FASTA/FASTQ files preprocessing.



More Details
==============

Next-Generation sequencing machines usually produce FASTA or FASTQ files, 
containing multiple short-reads sequences (possibly with quality information).

The main processing of such FASTA/FASTQ files 
more»

/usr/share/man/man1/fasta_clipping_histogram.pl.1.gz

FASTA_CLIPPING_HISTOGRAM.PL(User CommaFASTA_CLIPPING_HISTOGRAM.PL(1)



NAME
       fasta_clipping_histogram.pl - Create a Linker Clipping Infor‐
       mation Histogram

DESCRIPTION
       Create a Linker Clipping Information Histogram

       usage: m.pl INPUT_FILE.FA OUTPUT_FILE.PNG

       INPUT_FILE.FA
              = input file (in FASTA format, can be GZIPped)

              OUTPUT_FILE.P
more»

/usr/share/man/man1/fasta_formatter.1.gz

FASTA_FORMATTER(1)          User Commands         FASTA_FORMATTER(1)



NAME
       fasta_formatter 
more»

/usr/share/man/man1/fasta_nucleotide_changer.1.gz

FASTA_NUCLEOTIDE_CHANGER(1) User CommandsFASTA_NUCLEOTIDE_CHANGER(1)



NAME
       fasta_nucleotide
more»

/usr/share/man/man1/fastq_masker.1.gz

FASTQ_MASKER(1)             User Commands            FASTQ_MASKER(1)



NAME
       fastq_masker  - 
more»

/usr/share/man/man1/fastq_quality_boxplot_graph.sh.1.gz

FASTQ_QUALITY_BOXPLOT_GRAPH.User)CoFASTQ_QUALITY_BOXPLOT_GRAPH.SH(1)



NAME
       fastq_quality_bo
more»

/usr/share/man/man1/fastq_quality_converter.1.gz

FASTQ_QUALITY_CONVERTER(1)  User Commands FASTQ_QUALITY_CONVERTER(1)



NAME
       fastq_quality_co
more»

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