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vhybridize

Virtual Hybridization command line tools

Virtual Hybridization uses sets of short probes to generate datasets for comparative genomics: given a DNA sequence and a set of probes, the typical output will give a sequence of oriented probe hits along the DNA sequence. Other tools are supplied to allow simple manipulations such as format conversion and extraction of permutations.
Homepage:
Package version:0.5.9
Architecture:noarch
Distribution:Fedora
Filename:vhybridize-0.5.9-7.fc17.noarch.rpm

/usr/share/doc/vhybridize-0.5.9/README.txt


Virtual Hybridization
=====================

This package contains Virtual Hybridization tools.  Virtual
Hybridization uses sets of short probes to generate datasets for
comparative genomics: given a DNA sequence and a set of probes, the
typical output will give a sequence of oriented probe hits along the
DNA sequence. Other tools are supplied to allow simple manipulations
such as format convers
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/usr/share/doc/vhybridize-0.5.9/TODO.txt

Things that remain to be done on the vhybridze package.

 - Implement the compression of a permutation set with several selection
   scheme for the representative of a block.

 - Implement backends for other probe finder than blast and needle.

/usr/share/doc/vhybridize-0.5.9/AUTHORS.txt

Original Implementation:
  Yannick Gingras <ygingras@ygingras.net>

/usr/share/doc/vhybridize-0.5.9/COPYING.txt

                    GNU GENERAL PUBLIC LICENSE
                       Version 3, 29 June 2007

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