Filewatcher File Search File Search
Catalog
Content Search
» » » » » »

bfast

Blat-like Fast Accurate Search Tool

BFAST facilitates the fast and accurate mapping of short reads to reference sequences. Some advantages of BFAST include:

Speed: enables billions of short reads to be mapped quickly.

Accuracy: A priori probabilities for mapping reads with defined set of variants.

An easy way to measurably tune accuracy at the expense of speed.

Specifically, BFAST was designed to facilitate whole-genome resequencing, where mapping billions of short reads with variants is of utmost importance.

BFAST supports both Illumina and ABI SOLiD data, as well as any other Next-Generation Sequencing Technology (454, Helicos), with particular emphasis on sensitivity towards errors, SNPs and especially indels. Other algorithms take short-cuts by ignoring errors, certain types of variants (indels), and even require further alignment, all to be the "fastest" (but still not complete). BFAST is able to be tuned to find variants regardless of the error-rate, polymorphism rate, or other factors.

Homepage:
Package version:0.7.0a
Architecture:x86_64
Distribution:Fedora
Filename:bfast-0.7.0a-2.fc17.x86_64.rpm

/usr/share/doc/bfast-0.7.0a/README

Welcome to bfast.

bfast is copyrighted software. Please see the file LICENSE for details.

For manual pages, including installation directions, please see:
manual/bfast-book.pdf

/usr/share/doc/bfast-0.7.0a/NEWS

2008/03/01
	bfast conceived.
2008/07/01
	bfast first alpha version.
2008/09/27
	bfast first alpha version released to public.

/usr/share/doc/bfast-0.7.0a/ChangeLog

BFAST -- History of visible changes.

See LICENSE for details
See COPYING for copying conditions.

Please send bfast bug reports to bfast-help@lists.sourceforge.net 

Version 0.6.4d
* adding '-z' option in 'bfast postprocess' to choose a random best scoring
alignment when used with '-z 3'.
* MD tag in the SAM output modified to agree with 'samtools calmd'.

Version 0.6.4c
* bug fixed encountering 
more»

/usr/share/doc/bfast-0.7.0a/AUTHORS

Nils Homer <nhomer@cs.ucla.edu>
Barry Merriman <barrym@ucla.edu>
Stanley F. Nelson <snelson@ucla.edu
more»

/usr/share/doc/bfast-0.7.0a/LICENSE

		    GNU GENERAL PUBLIC LICENSE
		       Version 2, June 1991

 Copyright (C) 1989, 1991 Free Softw
more»

Browse inside bfast-0.7.0a-2.fc17.x86_64.rpm

1.56 KB2014-11-28HEADER  view  21 mirrors
         [DIR]usr/ (2)  65535+ mirrors

Download bfast-0.7.0a-2.fc17.x86_64.rpm

Results 1 - 1 of 1
Help - FTP Sites List - Software Dir.
Search over 15 billion files
© 1997-2017 FileWatcher.com