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An ultrafast, memory-efficient short read aligner

Bowtie, an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers. Please cite: Langmead B, et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10:R25.
Package version:0.12.7


To populate this directory, change to the bowtie directory and type
'make doc'.  You must have pandoc installed:


Bowtie: an Ultrafast, Lightweight Short Read Aligner

Bowtie NEWS

   Bowtie is now available for download.  0.9.0 is the first version to
be released under the OSI Artistic License (see `COPYING') and freely
available to the public for download.  The current version is 0.12.7.

Reporting Issues

Please report any issues using the Sourceforge bug tracker:



Bowtie authors
Primary contact <>

Ben Langmead and Cole Trapnell wrote Bowtie.  The SeqAn-1.1 library is
used in Bowtie and some of its sources are included in Bowtie source
releases; its authors are Andreas Doring, David Weese, Tobias Rausch,
and Knut Reinert.  A DLL from the pthreads for Win32 library is
distributed with the Win32 version of Bowtie.  The pthreads for Win32

Browse inside bowtie-0.12.7-4.fc17.x86_64.rpm

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Download bowtie-0.12.7-4.fc17.x86_64.rpm

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