Bio::Graphics - Generate GD images of Bio::Seq objects
This is a simple GD-based renderer (diagram drawer) for DNA and
protein sequences. It is used from Perl like this:
use Bio::DB::BioFetch; # or some other Bio::SeqI generator
# get a Bio::SeqI object somehow
my $bf = Bio::DB::BioFetch->new;
my $cosmid = $bf->getSeq_by_id('CEF58D5');
Bio::Graphics requires BioPerl version 1.6 ($VERSION 1.006 or higher),
which is expected to be released by the end of 2008. Until then, you
should use the version of Bio::Graphics that is in the current (1.5 or
lower) version of BioPerl.
Revision history for Perl extension Bio::Graphics.
1.97 Thu Jul 2 15:22:21 EDT 2009
- Added "feature_limit" option to put a cap on the maximum number of features that a
track will attempt to display. This only works correctly if features are added one at a
time with add_feature().
1.96 Thu Jun 4 17:49:57 EDT 2009
- Added "hat" and "hidden" glyphs, and changed way that the "l
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