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Bio-Graphics-1.97.tar.gz

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Filename:Bio-Graphics-1.97.tar.gz

/Bio-Graphics-1.97/README

Bio::Graphics - Generate GD images of Bio::Seq objects

SYNOPSIS

This is a simple GD-based renderer (diagram drawer) for DNA and
protein sequences.  It is used from Perl like this:

  use Bio::Graphics;
  use Bio::DB::BioFetch;  # or some other Bio::SeqI generator
  # get a Bio::SeqI object somehow
  my $bf     = Bio::DB::BioFetch->new;
  my $cosmid = $bf->getSeq_by_id('CEF58D5');

  my @features
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/Bio-Graphics-1.97/README.bioperl

Bio::Graphics requires BioPerl version 1.6 ($VERSION 1.006 or higher),
which is expected to be released by the end of 2008. Until then, you
should use the version of Bio::Graphics that is in the current (1.5 or
lower) version of BioPerl.


/Bio-Graphics-1.97/Changes

Revision history for Perl extension Bio::Graphics.
1.97 Thu Jul  2 15:22:21 EDT 2009
     - Added "feature_limit" option to put a cap on the maximum number of features that a 
     track will attempt to display. This only works correctly if features are added one at a
     time with add_feature().
1.96 Thu Jun  4 17:49:57 EDT 2009
     - Added "hat" and "hidden" glyphs, and changed way that the "l
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