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Bio-Graphics-2.02.tar.gz

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/Bio-Graphics-2.02/README

Bio::Graphics - Generate GD images of Bio::Seq objects

SYNOPSIS

This is a simple GD-based renderer (diagram drawer) for DNA and
protein sequences.  It is used from Perl like this:

  use Bio::Graphics;
  use Bio::DB::BioFetch;  # or some other Bio::SeqI generator
  # get a Bio::SeqI object somehow
  my $bf     = Bio::DB::BioFetch->new;
  my $cosmid = $bf->getSeq_by_id('CEF58D5');

  my @features
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/Bio-Graphics-2.02/README.bioperl

Bio::Graphics requires BioPerl version 1.6 ($VERSION 1.006 or higher),
which is expected to be released by the end of 2008. Until then, you
should use the version of Bio::Graphics that is in the current (1.5 or
lower) version of BioPerl.


/Bio-Graphics-2.02/Changes

Revision history for Perl extension Bio::Graphics.

2.02 Sun Mar 14 18:44:04 EDT 2010
     - Added a wiggle_whiskers glyph that works nicely with BigWig and
       BigBed data.
     - Fixed processed_transcript (and gene) glyphs so that thin UTRs are more attractive.
     - Fixed the behavior of transcript arrows to be more customizable and not to get
       too large.
     - Segments glyph now sh
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