Bio::Graphics - Generate GD images of Bio::Seq objects
This is a simple GD-based renderer (diagram drawer) for DNA and
protein sequences. It is used from Perl like this:
use Bio::DB::BioFetch; # or some other Bio::SeqI generator
# get a Bio::SeqI object somehow
my $bf = Bio::DB::BioFetch->new;
my $cosmid = $bf->getSeq_by_id('CEF58D5');
Bio::Graphics requires BioPerl version 1.6 ($VERSION 1.006 or higher),
which is expected to be released by the end of 2008. Until then, you
should use the version of Bio::Graphics that is in the current (1.5 or
lower) version of BioPerl.
Revision history for Perl extension Bio::Graphics.
2.04 Sun Apr 18 17:26:01 EDT 2010
- Segments glyph now smarter about fetching reference sequence; this improves performance
on multiple alignments.
- -show_mismatch option now takes following arguments: 0 (false), "always", "base level" (draw only
when DNA is in view), or a number, in which case mismatches will only be draw
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