Filewatcher File Search File Search
Content Search
» » » » »


Package version:-
Distribution:FreeBSD distfiles


Bio::Graphics - Generate GD images of Bio::Seq objects


This is a simple GD-based renderer (diagram drawer) for DNA and
protein sequences.  It is used from Perl like this:

  use Bio::Graphics;
  use Bio::DB::BioFetch;  # or some other Bio::SeqI generator
  # get a Bio::SeqI object somehow
  my $bf     = Bio::DB::BioFetch->new;
  my $cosmid = $bf->getSeq_by_id('CEF58D5');

  my @features


Bio::Graphics requires BioPerl version 1.6 ($VERSION 1.006 or higher),
which is expected to be released by the end of 2008. Until then, you
should use the version of Bio::Graphics that is in the current (1.5 or
lower) version of BioPerl.


Revision history for Perl extension Bio::Graphics.
2.04 Sun Apr 18 17:26:01 EDT 2010
     - Segments glyph now smarter about fetching reference sequence; this improves performance
       on multiple alignments.
     - -show_mismatch option now takes following arguments: 0 (false), "always", "base level" (draw only
       when DNA is in view), or a number, in which case mismatches will only be draw

Browse inside Bio-Graphics-2.04.tar.gz

         [DIR]Bio-Graphics-2.04/ (12)

Download Bio-Graphics-2.04.tar.gz

Results 1 - 1 of 1
Help - FTP Sites List - Software Dir.
Search over 15 billion files
© 1997-2017