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Bio-Graphics-2.14.tar.gz

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Filename:Bio-Graphics-2.14.tar.gz

/Bio-Graphics-2.14/README

Bio::Graphics - Generate GD images of Bio::Seq objects

SYNOPSIS

This is a simple GD-based renderer (diagram drawer) for DNA and
protein sequences.  It is used from Perl like this:

  use Bio::Graphics;
  use Bio::DB::BioFetch;  # or some other Bio::SeqI generator
  # get a Bio::SeqI object somehow
  my $bf     = Bio::DB::BioFetch->new;
  my $cosmid = $bf->getSeq_by_id('CEF58D5');

  my @features
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/Bio-Graphics-2.14/README.bioperl

Bio::Graphics requires BioPerl version 1.6 ($VERSION 1.006 or higher),
which is expected to be released by the end of 2008. Until then, you
should use the version of Bio::Graphics that is in the current (1.5 or
lower) version of BioPerl.


/Bio-Graphics-2.14/Changes

Revision history for Perl extension Bio::Graphics.
 
2.14
     - Fixes to the way that "fast bump" works so that tracks never fast bump.
       This fixes problems when using groups to simulate subtracks, and the
       groups are of different heights.

2.13
     - Changed default namespace for callbacks to make them portable across freeze/thaw
       cycles.

2.12 Tue Aug 31 10:42:06 EDT 2010
   
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