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Bio-BigFile-1.06.tar.gz

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Filename:Bio-BigFile-1.06.tar.gz

/Bio-BigFile-1.06/README

This is a Perl interface to the UCSC Genome Browser BigWig and BigBed
files, which are indexed genome feature databases that can be randomly
accessed across the network. Please see
http://genome.ucsc.edu/FAQ/FAQformat.html for information about
creating these files.

Step 1) COMPILE JIM KENT SOURCE TREE

To compile this module, you must first download, unpack and compile
the Jim Kent source tree, 
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/Bio-BigFile-1.06/Changes

Version 1.05
	* Added patch to Jim Kent build tree to allow for compilation on
	MacOS X.

Version 1.04 
	 * Added the following methods to Bio::DB::BigWig::Summary objects: 
	 chr_stats(),    chr_mean(),    chr_stdev(), 
	 global_stats(), global_mean(), global_stdev().
	 * Fixed BigWigSet->get_feature_by_id() to return correct class of
	   object (e.g. summary).

Version 1.03
	* Added a get_seq_st
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/Bio-BigFile-1.06/LICENSE

a) the GNU General Public License as published by the Free
   Software Foundation; either version 1, or (at your option) any
   later version, or
b) the "Artistic License 2.0"

----------------------------------------------------------------------------

The General Public License (GPL)
Version 2, June 1991

Copyright (C) 1989, 1991 Free Software Foundation, Inc. 675 Mass Ave,
Cambridge, MA 02139,
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