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Bio-Graphics-1.99.tar.gz

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Filename:Bio-Graphics-1.99.tar.gz

/Bio-Graphics-1.99/README

Bio::Graphics - Generate GD images of Bio::Seq objects

SYNOPSIS

This is a simple GD-based renderer (diagram drawer) for DNA and
protein sequences.  It is used from Perl like this:

  use Bio::Graphics;
  use Bio::DB::BioFetch;  # or some other Bio::SeqI generator
  # get a Bio::SeqI object somehow
  my $bf     = Bio::DB::BioFetch->new;
  my $cosmid = $bf->getSeq_by_id('CEF58D5');

  my @features
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/Bio-Graphics-1.99/README.bioperl

Bio::Graphics requires BioPerl version 1.6 ($VERSION 1.006 or higher),
which is expected to be released by the end of 2008. Until then, you
should use the version of Bio::Graphics that is in the current (1.5 or
lower) version of BioPerl.


/Bio-Graphics-1.99/Changes

Revision history for Perl extension Bio::Graphics.
1.99 Mon Nov 16 08:15:23 EST 2009  
     - Segments glyph now handles indels for features that have CIGAR strings.
1.982 Wed Aug 26 17:57:43 EDT 2009
     - Fixed DAS stylesheet support so that Ensembl and Dazzle sources both work
       properly.	 
1.981 Wed Aug 19 15:21:31 EDT 2009
     - Peter Ruzanov fixed bug in wiggle_xyplot that caused hist
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