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Bio-SamTools-1.17.tar.gz

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Filename:Bio-SamTools-1.17.tar.gz

/Bio-SamTools-1.17/README

This is a Perl interface to the SAMtools sequence alignment interface.
See http://samtools.sourceforge.net/.

To compile this module, you must first download, unpack and compile
SAMtools 0.1.4 or higher in some accessible directory. FOR SAMTOOLS
VERSION 0.1.4, YOU MUST RUN "make -f makefile.generic" IN THE
DISTRIBUTION DIRECTORY IN ORDER TO CREATE THE REQUIRED libbam.a
LIBRARY FILE. For other vers
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/Bio-SamTools-1.17/Changes

Version 1.17
    * Fixed bug in processing of MD tag that returned incorrect reference sequence when alignment
      contains soft clips.
    * Fixed processing of "A" tags so that they return the appropriate 1 character string rather than
      undef.

Version 1.16
    * No longer attempt to build BAM index automatically if the .bai file is
      either missing or out of date. Pass -autoindex=>1 
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/Bio-SamTools-1.17/LICENSE

a) the GNU General Public License as published by the Free
   Software Foundation; either version 1, or (at your option) any
   later version, or
b) the "Artistic License 2.0"

----------------------------------------------------------------------------

The General Public License (GPL)
Version 2, June 1991

Copyright (C) 1989, 1991 Free Software Foundation, Inc. 675 Mass Ave,
Cambridge, MA 02139,
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