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GBrowse-2.42.tar.gz

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Filename:GBrowse-2.42.tar.gz

/GBrowse-2.42/README

GBROWSE README

The Generic Genome Browser (GBrowse) is a simple but highly
configurable web-based genome browser.  It is a component of the
Generic Model Organism Systems Database project (GMOD).

******* DOWNLOADING ******

The 2.X versions are now considered stable. You may download it from
CPAN at http://search.cpan.org/~lds/GBrowse/ or get the developer's
version via SVN:

Checkout read-only

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/GBrowse-2.42/README.IF.GBROWSE.ISNT.WORKING

If you got an svn checkout of GBrowse and it isn't working, it is probably 
because you checked out from the svn HEAD, which is the main development 
branch.  Unfortunately, that branch is often unstable due to some 
major reworking which will make GBrowse much better.  In the mean time
(that is, until this README disappears), please check out from the
stable branch.  You can use almost the same s
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/GBrowse-2.42/README.fedora_and_selinux

If you have SELinux installed, typically as part of Fedora Core 3 or
higher, then you may experience difficulties getting GBrowse to work.

The default security parameters for SELinux prevent GBrowse from
performing some fundamental tasks, including reading its configuration
file in $CONF/GBrowse.conf (where $CONF is typically /etc/httpd/conf
or /usr/local/apache/conf). The symptom of the problem 
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/GBrowse-2.42/README.gff3

GFF3 is the successor to the GFF2 feature file format. Its main
advantage is that it uses the Sequen
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/GBrowse-2.42/contrib/Coverage/README

$Id: README,v 1.1 2002-10-23 21:43:19 mavcunha Exp $



/GBrowse-2.42/contrib/GeneFinder/genefinder/README

gfcode creates genefinder features such as potential splice sites from
DNA.  It uses code originati
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/GBrowse-2.42/contrib/README

This directory contains various individuals' contributions to the
gbrowse project, as well as some o
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/GBrowse-2.42/contrib/SynView/README

The files in this directory were supplied by Haiming Wang and
Jessica Kissinger at University of Geo
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