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ugene_1.9.8+repack.orig.tar.gz

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/ugene-1.9.8/installer/_common_data/README

                           ----------------
                            UNIPRO   UGENE
                           ----------------

-----------
What is it?
-----------

Unipro UGENE is a free unified bioinformatics toolkit. 
The goal of the project is to integrate popular bioinformatics
methods and algorithms within single visual interface. 

UGENE allows to construct custom analisys pipelines us
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/ugene-1.9.8/src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1/README.txt

This is SeqAn, the C++ template library for sequence analysis

See http://www.seqan.de for more information

Read "docs/Page_Installation.html" for detailed installation instructions.


Folders:
========

"seqan": SeqAn library (add the folder that contains "seqan" to 
         your include path)
"demos": SeqAn demos, see also "docs/INDEXPAGE_Demo.html"
"apps":  SeqAn applications
"docs":  HTML-Do
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/ugene-1.9.8/data/workflow_samples/Conversions/faqual2fastq.uwl

#!UGENE_WORKFLOW
#This schema allows to add PHRED quality scores to the sequence and save output to Fastq. For example, one can read a Fasta file, import PHRED quality values from corresponding qualities file and export the result to Fastq.
#To execute the schema do the following:
#1) Select "Sequence Reader" task and specify source file(s) at "URL" field in the Property Editor.
#2) Select "Import
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/ugene-1.9.8/LICENSE

		    GNU GENERAL PUBLIC LICENSE
		       Version 2, June 1991

 Copyright (C) 1989, 1991 Free Softw
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/ugene-1.9.8/data/license

		    GNU GENERAL PUBLIC LICENSE
		       Version 2, June 1991

 Copyright (C) 1989, 1991 Free So
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/ugene-1.9.8/src/plugins_3rdparty/hmm3/src/hmmer3/easel/LICENSE

The Janelia Farm Software License 

Redistribution and use in source and binary forms, with or witho
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/ugene-1.9.8/src/plugins_3rdparty/psipred/src/LICENSE

PLEASE READ THE FOLLOWING LICENSE AGREEMENT. BY USING THE PROGRAM YOU ARE
ACKNOWLEDGING THE FACT THA
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/ugene-1.9.8/COPYRIGHT

Unipro UGENE - Integrated Bioinformatics Suite
Copyright (C) 2008-2011 Unipro, Novosibirsk, Russia


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