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velvet

Nucleic acid sequence assembler for very short reads

Velvet is a de novo genomic assembler specially designed for short read sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near Cambridge, in the United Kingdom.

Velvet currently takes in short read sequences, removes errors then produces high quality unique contigs. It then uses paired read information, if available, to retrieve the repeated areas between contigs.

Homepage:
Package version:0.7.56~nozlibcopy-1
Architecture:amd64
Distribution:Ubuntu
Filename:velvet_0.7.56~nozlibcopy-1_amd64.deb

/usr/share/doc/velvet/README.Debian

Velvet for Debian
-----------------

Third party scripts have been placed in ‘/usr/share/velvet/contrib’.

 -- Charles Plessy <plessy@debian.org>  Sat, 11 Jul 2009 18:06:40 +0900

/usr/share/doc/velvet/README.txt

README.TXT

VELVET SOURCE 
March 28 2008
Daniel Zerbino

NOTE: The PDF manual in this directory contains all the information contained
in this text file, plus much more!

> SUMMARY
	* A/ REQUIREMENTS
	* B/ COMPILING INSTRUCTIONS

----------------------------------------------------------------------------------
A/ REQUIREMENTS

	Velvet should function on any standard 64bit Linx environment with
gc
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/usr/share/velvet/contrib/README.txt

contrib/ guide:

In this directory you will find software developed by various programmers which could be useful to Velvet users:

>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
- afg_handling by Simon Gladman (Simon.Gladman@csiro.au)

These two scripts allow you to examine the (generally) large .afg files which can be produced by Velvet

	asmbly_splitter allows you to choose a specific sca
more»

/usr/share/velvet/contrib/VelvetOptimiser-2.1.0/README

NAME
====

VelvetOptimiser

VERSION
=======

Version 2.1.0

LICENCE
=======

Copyright 2009 - Simon 
more»

/usr/share/velvet/contrib/layout/README.txt

Graph layout script by Paul Harrison (pfh@logarithmic.net)

1. Function:
	This script is a connector
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/usr/share/man/man1/velvetg.1.gz

VELVETG(1)                  User Commands                 VELVETG(1)



NAME
       velvetg  -  de  
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/usr/share/man/man1/velvetg_de.1.gz

VELVETG(1)                  User Commands                 VELVETG(1)



NAME
       velvetg  -  de  
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/usr/share/man/man1/velveth.1.gz

VELVETH(1)                  User Commands                 VELVETH(1)



NAME
       velveth - simple
more»

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